View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_low_7 (Length: 444)
Name: NF17877_low_7
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 169 - 434
Target Start/End: Original strand, 31058866 - 31059131
Alignment:
| Q |
169 |
aaaataagtcacccttaaattcatgccatgnnnnnnnggaaacaaaccaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagct |
268 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31058866 |
aaaataagtcacccttaaattcatgccatgtttttttggaaacaaatcaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagct |
31058965 |
T |
|
| Q |
269 |
gacccaatagactatttaccaatcatgaaggcgcattgtagtttatgcttattctatctactttattatccaaagcaaataaagcttttatgatggtgca |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31058966 |
gacccaatagactatttaccaatcatgaaggcgcattgtagtttatgcttattctatctactttattatccaaagcaaataaagcttttatgatggtgca |
31059065 |
T |
|
| Q |
369 |
atgaagttgaattgttatccatcatagcacaacacataagcttagacttgaaactttgattttctt |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31059066 |
atgaagttgaattgttatccatcatagcacaacacataagcttagactttaaactttgattttctt |
31059131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 31058579 - 31058730
Alignment:
| Q |
19 |
atcctcatgttggagcaatagcaacgtctcaacccatcgtgttgtaaattgaaccaaaaacatagttcatagcagaatgatatatatatggaaaagaata |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||| |||| |
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| T |
31058579 |
atcctcatgttggagcaatagcaacgtctcaaaccatcgtgttgtaactttaaccaaaaacat-gttcatagcagaatgatat--atatggaaaaaaata |
31058675 |
T |
|
| Q |
119 |
cattagaaaggtcaaattcataaaggattctaaccagggaaaatgatttaaaaat |
173 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
31058676 |
cattagaagggtcaaattcataaaggattctaatcagggaaaatgatttacaaat |
31058730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 29142263 - 29142149
Alignment:
| Q |
281 |
tatttaccaatcatgaaggcgcattgtagtttatgcttattctatct-actttattatccaaagcaaataaagcttttatgatggtgcaatgaagttgaa |
379 |
Q |
| |
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|||||| ||||||||||| ||||| | ||||||||||||||||||| || ||||||||||| |||||| ||||| ||||||||||||| | ||||||| |
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| T |
29142263 |
tatttaacaatcatgaagctgcattattgtttatgcttattctatcttacattattatccaatgcaaattaagctgttatgatggtgcagaggagttgaa |
29142164 |
T |
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| Q |
380 |
ttgttatccatcata |
394 |
Q |
| |
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|| ||||||||||| |
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| T |
29142163 |
tttctatccatcata |
29142149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 207 - 434
Target Start/End: Original strand, 55781338 - 55781566
Alignment:
| Q |
207 |
gaaacaaaccaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagctgacccaatagactatttaccaatcatgaaggcgcattg |
306 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55781338 |
gaaacaaaccaagactaacgcagccactttagcatactaaacaatgactacccgtaacagctgacccaatagactatttaccaatcatgaaggtgcattg |
55781437 |
T |
|
| Q |
307 |
tagtttatgcttattctatc-tactttattatccaaagcaaataaagcttttatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat |
405 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55781438 |
tagtttatgcttattcaatcatactttattatccaaagcaagtaaagctttcatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat |
55781537 |
T |
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| Q |
406 |
aagcttagacttgaaactttgattttctt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
55781538 |
aagcttagacttgaaactttgattttctt |
55781566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 207 - 434
Target Start/End: Original strand, 55845518 - 55845746
Alignment:
| Q |
207 |
gaaacaaaccaaaactaacgcagccactttagcatactaaacaatgactacccaaaacagctgacccaatagactatttaccaatcatgaaggcgcattg |
306 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55845518 |
gaaacaaaccaagactaacgcagccactttagcatactaaacaatgactacccgtaacagctgacccaatagactatttaccaatcatgaaggtgcattg |
55845617 |
T |
|
| Q |
307 |
tagtttatgcttattctatc-tactttattatccaaagcaaataaagcttttatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat |
405 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55845618 |
tagtttatgcttattcaatcatactttattatccaaagcaagtaaagctttcatgatggtgcaatgaagttgaattgttatccatcatagcacaacacat |
55845717 |
T |
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| Q |
406 |
aagcttagacttgaaactttgattttctt |
434 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
55845718 |
aagcttagacttgaaactttgattttctt |
55845746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 9605411 - 9605499
Alignment:
| Q |
281 |
tatttaccaatcatgaaggcgcattgtagtttatgcttattctatct-actttattatccaaagcaaataaagcttttatgatggtgca |
368 |
Q |
| |
|
|||||| |||||| ||||| |||| ||||| || | ||||| |||| |||||||||||||| || ||| ||||| ||||||||||||| |
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| T |
9605411 |
tatttaacaatcaagaaggttcattatagttaatacctattcaatcttactttattatccaatgctaattaagctgttatgatggtgca |
9605499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 363
Target Start/End: Original strand, 8510602 - 8510678
Alignment:
| Q |
288 |
caatcatgaaggcgcattgtagtttatgcttattctatc-tactttattatccaaagcaaataaagcttttatgatg |
363 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||| | ||||||||||| | |||| || ||||||||||| |
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| T |
8510602 |
caatcatgaaggtgcattttagtttatgcttattctatctttttttattatccagtggaaattaaacttttatgatg |
8510678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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