View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17878_high_13 (Length: 332)
Name: NF17878_high_13
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 28090033 - 28090339
Alignment:
| Q |
20 |
atgaataagtagataatctatggttcaaaccttaacccttacatattaaagtgattttgacttaaactaagttcaatgttaagtgatttatgttcgatac |
119 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
28090033 |
atgaataagtagagaatttatggttcaaacctcaactcttacatattaaagtgattttgaccgaaattaagttcaatgttaaatgatttatgttcgatac |
28090132 |
T |
|
| Q |
120 |
attcacatattaaagtaagtagaaaactcggataagaaaagttaaacaaaaaacaggaatatctcaatccaacatccatgtgacccaaaagaaccatcct |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28090133 |
attcgcatattaaagtaagtagaaaactcggataagaaaagttaaacaaataacaggaatatctcaatccaacatccatgtgacccaaaagaaccatcct |
28090232 |
T |
|
| Q |
220 |
tccacacaattttttggattaagtcagaagtattaatttgatt--nnnnnnncactgaatcccattacagtaataagaatgtactttaactttggacaag |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28090233 |
tccacacaattttttggattaagtcggaagtattaatttgattaaataaaaacactgaatcccattacagtaataagaatgtgctttaactttggacaag |
28090332 |
T |
|
| Q |
318 |
tttcaac |
324 |
Q |
| |
|
||||||| |
|
|
| T |
28090333 |
tttcaac |
28090339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10495838 - 10495809
Alignment:
| Q |
1 |
tagaaattcaactcttaagatgaataagta |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10495838 |
tagaaattcaactcttaagatgaataagta |
10495809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University