View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17878_high_15 (Length: 310)

Name: NF17878_high_15
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17878_high_15
NF17878_high_15
[»] chr2 (1 HSPs)
chr2 (18-310)||(14362096-14362389)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 14362389 - 14362096
Alignment:
Q  18 ggtcccatcaaaatttccttttctaaaaactatttatcaaaaatgatttgaaacctagcatata--catacaagaaagtcgacccaatatgtgataacta 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  14362389 ggtcccatcaaaatttccttt-ctaaaaactatttatcaaaaatgatttgaaacctagcatatatacatacaacaaagtcgacccaatatgtgataacta 14362291  T
Q  116 ataacaatgtaatatttttcttatgacaagataatattatattttcgctttccttaaaatttgatggattgtaagaggagaagagcaaccatatatatat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14362290 ataacaatgtaatatttttcttatgacaagataatattatattatcgctttccttaaaatttgatggattgtaagaggagaagagcaaccatatatatat 14362191  T
Q  216 tagtgatgcaaattctcatgtaaattctttatttaaacactctccttgttttgctccaaaacactcgtttacctatttaatctctccttcatatt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14362190 tagtgatgcaaattctcatgtaaattctttatttaaacactctccttgttttgctccaaaacactcgtttaccgatttaatctctccttcatatt 14362096  T

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