View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17878_high_16 (Length: 297)

Name: NF17878_high_16
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17878_high_16
NF17878_high_16
[»] chr5 (1 HSPs)
chr5 (58-281)||(26335620-26335843)
[»] chr8 (2 HSPs)
chr8 (240-275)||(25727557-25727592)
chr8 (241-274)||(12012432-12012465)
[»] chr1 (2 HSPs)
chr1 (215-281)||(17103385-17103452)
chr1 (240-274)||(43282510-43282544)
[»] chr6 (1 HSPs)
chr6 (240-281)||(24575810-24575851)
[»] chr4 (1 HSPs)
chr4 (240-281)||(11449449-11449490)
[»] chr2 (14 HSPs)
chr2 (240-281)||(42256286-42256327)
chr2 (241-281)||(45572306-45572346)
chr2 (241-281)||(45575973-45576013)
chr2 (241-281)||(45579640-45579680)
chr2 (241-281)||(45583307-45583347)
chr2 (241-281)||(45586974-45587014)
chr2 (241-281)||(45590641-45590681)
chr2 (241-281)||(45594308-45594348)
chr2 (241-281)||(45597975-45598015)
chr2 (241-281)||(45601642-45601682)
chr2 (241-281)||(45605309-45605349)
chr2 (241-281)||(45608976-45609016)
chr2 (241-281)||(45612643-45612683)
chr2 (241-281)||(45616310-45616350)
[»] chr7 (1 HSPs)
chr7 (214-281)||(32957573-32957641)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 58 - 281
Target Start/End: Complemental strand, 26335843 - 26335620
Alignment:
Q  58 tttctgattctgaatgaaatacttcgaggtgtttcggtttctccaatcatgagacatttttcataggtatgcagagaatctgcttcagtctttctttctt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  26335843 tttctgattctgaatgaaatacttcgaggtgtttcggtttctccaatcataagacatttttcataggtatgcagagaacctgcttctgtctttctttctt 26335744  T
Q  158 tgttagcggtgttcaccgcgaatattcccgattctcttttctctcccatatccttctctgatatggataatggcttgaaaatacatttgaaattcctttg 257  Q
    |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  26335743 tgttggtggtgttcaccacgaatattcccgattctcttttctctcccatatccttctctgatatggataatgtcttgaaaagacatttgaaattcctttg 26335644  T
Q  258 ctgcaattggaattatccgttcat 281  Q
    |||||| |||||||||||||||||    
T  26335643 ctgcaactggaattatccgttcat 26335620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 25727592 - 25727557
Alignment:
Q  240 acatttgaaattcctttgctgcaattggaattatcc 275  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25727592 acatttgaaattcctttactgcaattggaattatcc 25727557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 12012465 - 12012432
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatc 274  Q
    ||||||||||||||||||| ||||||||||||||    
T  12012465 catttgaaattcctttgcttcaattggaattatc 12012432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 17103452 - 17103385
Alignment:
Q  215 ctgatatggataatggc-ttgaaaatacatttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    ||||||| ||||||| | ||||| | |||||||||||| ||||||||||| |||||||||| ||||||    
T  17103452 ctgatatagataatgccattgaatagacatttgaaatttctttgctgcaactggaattatctgttcat 17103385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 43282544 - 43282510
Alignment:
Q  240 acatttgaaattcctttgctgcaattggaattatc 274  Q
    |||||||||||||||||||||||| ||||||||||    
T  43282544 acatttgaaattcctttgctgcaaatggaattatc 43282510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 24575810 - 24575851
Alignment:
Q  240 acatttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||| ||||| |||||||||| ||||||    
T  24575810 acatttgaaattcctttgatgcaactggaattatctgttcat 24575851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 11449490 - 11449449
Alignment:
Q  240 acatttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  11449490 acatttgaaattcctttgttgaaactggaattatccgttcat 11449449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 42256286 - 42256327
Alignment:
Q  240 acatttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    ||||||||||||||||| |||||||| |||||| ||||||||    
T  42256286 acatttgaaattcctttactgcaattagaattacccgttcat 42256327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45572346 - 45572306
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45572346 catttgaaattcctttgctgaaactggaattgtccgttcat 45572306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45576013 - 45575973
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45576013 catttgaaattcctttgctgaaactggaattgtccgttcat 45575973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45579680 - 45579640
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45579680 catttgaaattcctttgctgaaactggaattgtccgttcat 45579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45583347 - 45583307
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45583347 catttgaaattcctttgctgaaactggaattgtccgttcat 45583307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45587014 - 45586974
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45587014 catttgaaattcctttgctgaaactggaattgtccgttcat 45586974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45590681 - 45590641
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45590681 catttgaaattcctttgctgaaactggaattgtccgttcat 45590641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45594348 - 45594308
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45594348 catttgaaattcctttgctgaaactggaattgtccgttcat 45594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45598015 - 45597975
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45598015 catttgaaattcctttgctgaaactggaattgtccgttcat 45597975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45601682 - 45601642
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45601682 catttgaaattcctttgctgaaactggaattgtccgttcat 45601642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45605349 - 45605309
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45605349 catttgaaattcctttgctgaaactggaattgtccgttcat 45605309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45609016 - 45608976
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45609016 catttgaaattcctttgctgaaactggaattgtccgttcat 45608976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45612683 - 45612643
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45612683 catttgaaattcctttgctgaaactggaattgtccgttcat 45612643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 45616350 - 45616310
Alignment:
Q  241 catttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  45616350 catttgaaattcctttgctgaaactggaattgtccgttcat 45616310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 32957573 - 32957641
Alignment:
Q  214 tctgatatggataatggc-ttgaaaatacatttgaaattcctttgctgcaattggaattatccgttcat 281  Q
    |||||||||||||||| | ||||  | ||||| ||||||||||||||| || |||||||||| ||||||    
T  32957573 tctgatatggataatgtcgttgattagacattcgaaattcctttgctgaaactggaattatctgttcat 32957641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University