View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_2 (Length: 545)
Name: NF17878_high_2
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 244 - 542
Target Start/End: Original strand, 7804262 - 7804560
Alignment:
| Q |
244 |
ctctgtttccaaatactccaaatcaagactgaaaataaagaggcttgctcttgatttagcccctgtagaatagaaaagaacgaatctgccccatcctatg |
343 |
Q |
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| T |
7804262 |
ctctgtttccaaatactccaaatcaagactgaaaataaagaggcttgctcttgatttagcccctgtagaatagaaaagaacgaatctgccccaccctatg |
7804361 |
T |
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| Q |
344 |
acaaacctgagaagcattgttgcagaaaccgaacagatgaaggttgtcttctaaatcattggcacaaagaacatgatggcttagacaattaacacccgtt |
443 |
Q |
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| T |
7804362 |
acaaacctgagaagcattgttgcagaaaccgaacagatgaaggttgtcttctaaatcattggcacaaagaacatgatggcttagacaattaacacccgtt |
7804461 |
T |
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| Q |
444 |
taaagttccataataagatgtcgtggcttgatcctacacatcacttgtaaccttcacgaacggcaaaccttgcactccagccactccctatgcttctcc |
542 |
Q |
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| T |
7804462 |
tacagttccataataagatgtcgtggcttgatcctacgcatcacttgtaaccttcacgaacggcaaaccttgcactccagccactcccaatgcttctcc |
7804560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 7804006 - 7804237
Alignment:
| Q |
17 |
agaaatggatcctcatgtcacattttcatgtaacatgatggtatgaaaacnnnnnnnatctttctcttatgaaacattaaatagtttgtgaatgcctacg |
116 |
Q |
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| T |
7804006 |
agaaatggatcctcatgtcacattttcatgtaacatgatggtatgaaaactttttttatctttctcgtatgaaacattaaatagtttgtgaaagcctacg |
7804105 |
T |
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| Q |
117 |
aaagagaaacataaacaaacatgacaagaaagtggcaggtgacctgttggatgatgcaatatagcaacatcagctcatttcttagttgatttttatgcaa |
216 |
Q |
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| T |
7804106 |
aaagagaaacataaacaaacatgacaagaaagtggcaggtgacctgttggatgatgcaatatagcaacatcagctcatttcttagttgatttttatgcaa |
7804205 |
T |
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| Q |
217 |
ctgaactcacttgacattataaatcagctctg |
248 |
Q |
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| T |
7804206 |
ctgaactcacttgacattataaatcagctctg |
7804237 |
T |
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