View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_22 (Length: 270)
Name: NF17878_high_22
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 28090033 - 28090275
Alignment:
| Q |
20 |
atgaataagtagataatctatggttcaaaccttaacccttacatattaaagtgattttgacttaaactaagttcaatgttaagtgatttatgttcgatac |
119 |
Q |
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| T |
28090033 |
atgaataagtagagaatttatggttcaaacctcaactcttacatattaaagtgattttgaccgaaattaagttcaatgttaaatgatttatgttcgatac |
28090132 |
T |
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| Q |
120 |
attcacatattaaagtaagtagaaaactcggataagaaaagttaaacaaaaaacaggaatatctcaatccaacatccatgtgacccaaaagaaccatcct |
219 |
Q |
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| T |
28090133 |
attcgcatattaaagtaagtagaaaactcggataagaaaagttaaacaaataacaggaatatctcaatccaacatccatgtgacccaaaagaaccatcct |
28090232 |
T |
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| Q |
220 |
tccacacaattttttggattaagtcagaagtattaatttgatt |
262 |
Q |
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| T |
28090233 |
tccacacaattttttggattaagtcggaagtattaatttgatt |
28090275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10495838 - 10495809
Alignment:
| Q |
1 |
tagaaattcaactcttaagatgaataagta |
30 |
Q |
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| T |
10495838 |
tagaaattcaactcttaagatgaataagta |
10495809 |
T |
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