View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_24 (Length: 267)
Name: NF17878_high_24
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 22681072 - 22680834
Alignment:
| Q |
19 |
aatacacgttagagtatatttaaaaactattcctatcttatttgaataaaatttaaatatcaacaaaaggatttagcatacctggtatgatcatatcagg |
118 |
Q |
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| T |
22681072 |
aatacacgttagagtatatttacaaactattcctatcttatttgaataaaatttaaatatcaacaaaaggatttagcataccaggtatgatcatatcagg |
22680973 |
T |
|
| Q |
119 |
tcttccctccattgatctaaaccactggattcnnnnnnngccttgtttcccaccactataaatgccatcaacataataaacactggtatggaatcctttt |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22680972 |
tcttccctccattgatctaaaccactggattctttttttgccttgtttcccaccactataaatgccatcaacataataaacactggtatggaatcctttt |
22680873 |
T |
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| Q |
219 |
ccctcaatcttcagattgtgtactctaggaatccctatg |
257 |
Q |
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| T |
22680872 |
ccctcgatcttcagattgtgtactctaggaatccctatg |
22680834 |
T |
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Back To:
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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 21213116 - 21213344
Alignment:
| Q |
30 |
gagtatatttaaaaactattcctatcttatttgaataaaatttaaatatcaacaaaaggatttagcatacctggtat---gatcatatcaggtcttccct |
126 |
Q |
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||||||||||| ||||||||||| | |||||| ||||| |||| |||||||| |||||||||||||||||||||||| ||| | |||||| ||||| |
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| T |
21213116 |
gagtatatttacaaactattcctgtattatttaaataacatttcaatatcaataaaaggatttagcatacctggtatagagatgagatcaggacttccaa |
21213215 |
T |
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| Q |
127 |
ccattgatctaaaccactggattcnnnnnnngccttgtttcccaccactataaatgccatcaacataataaacactggtatggaatccttttccctcaat |
226 |
Q |
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|||||||||||| |||||||| || |||| ||||||||||||||||||||| |||| ||| | | ||||||||||||| ||||||| || |
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| T |
21213216 |
ccattgatctaagccactggactctactttttccttccttcccaccactataaatgccacgaacagcatagagattggtatggaatccccttccctcgat |
21213315 |
T |
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| Q |
227 |
cttcagattgtgtactctaggaatcccta |
255 |
Q |
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|| ||| ||||||| |||||||||||||| |
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| T |
21213316 |
ctccagcttgtgtattctaggaatcccta |
21213344 |
T |
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