View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_32 (Length: 239)
Name: NF17878_high_32
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 41151356 - 41151140
Alignment:
| Q |
23 |
aacactaccaatgataatccgccacgtctacctcattgtacattcttgcttggttaagttggttcaattcatcaccattcatagggtatctttaacttca |
122 |
Q |
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| T |
41151356 |
aacactaccaatgataatccgctacgtctacctcattgtacattctttcttggttaagttggttcaattcatcaccattcatagggtatctttaacttca |
41151257 |
T |
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| Q |
123 |
aattgaagaaaaatacaaacagagcattaaatagatgtagggtaccgtattttacttaaaactaaagtggaagctttgaacttttttggatttattaaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41151256 |
aattgaagaaaaatacaaacagagcattaaatagatgtagggtaccgtattttacttaaaactaaagtggaagctttgaacttttttggacttattaaaa |
41151157 |
T |
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| Q |
223 |
ttaatagtattcagctt |
239 |
Q |
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||||||||||||||||| |
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| T |
41151156 |
ttaatagtattcagctt |
41151140 |
T |
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