View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_34 (Length: 228)
Name: NF17878_high_34
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31450729 - 31450510
Alignment:
| Q |
1 |
ccgattcccatatgccattaatgactcattttcagccggccttgaattattttatttaaagagctaaaatgggtccatatattttgttttgacttgtcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31450729 |
ccgattcccatatgccattaatgactcattttcagccggccttgaattattttatttaaagagctaaaatgggtccatatattttgttttgacttgtcat |
31450630 |
T |
|
| Q |
101 |
caacaagggttcatccttttnnnnnnnntcaactagggttcaaaattttgcattaagagttaaaattttcaaaggtatcctcaaatgtttatagtagttt |
200 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31450629 |
caacaagggttcatcc-tttaaaaaaaatcaactagggttcaaaattttgcattaagagttaaaattttcaaaggtatcctcaaatgtttatagtagttt |
31450531 |
T |
|
| Q |
201 |
ttattttcaactttcatttca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31450530 |
ttattttcaactttcatttca |
31450510 |
T |
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