View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_6 (Length: 412)
Name: NF17878_high_6
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 38342082 - 38342463
Alignment:
| Q |
17 |
cacaaatcagagacgtgaaaaagatgacaaatcataataacatatatttacacatgtcagggtagtgcttattttgaggtagaagaaaagataaagcttc |
116 |
Q |
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| T |
38342082 |
cacaaatcagagaagtgaaaaagatgacaaatcataataacatatatttacacatgtcagggtagtgcttattttgaggtagaagaaaagataaagcttc |
38342181 |
T |
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| Q |
117 |
gagttggttgagagagcagctgagaattataatttctttggcggatagcagctggaacaaagctgagctataatctagagttggtgctttgggcgtgaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342182 |
gagttggttgagagagcagctgagaattataatttctttggcggatagcagctggaacaaagctgagctataatctagagttggtgctttgggcgtgaat |
38342281 |
T |
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| Q |
217 |
gcatgctgatgttgtggcgtggcatatattctagtaggatgttggagattatctgggcacaaaattggagaataattctgcatattgttttgatagagcc |
316 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342282 |
gcgtgctgatgttgtggcgtggcatatattctagtaggatgttggagattatttgggcacaaaattggagaataattctgcatattgttttgatagagcc |
38342381 |
T |
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| Q |
317 |
cagtcacggagactgtgttgggataccaagaaaatggttgtggtaaataggtccaggtatgtaatgaattcaattgtctgtg |
398 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38342382 |
cagtcacagagactgtgttgggataccaagaaaatggttgtggtaaataggtctgggtatgtaatgaattcaattgtctgtg |
38342463 |
T |
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