View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_high_9 (Length: 389)
Name: NF17878_high_9
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 49773070 - 49772712
Alignment:
| Q |
18 |
attccaacaatcagagggtcatggaatcgggacgaggattgagaatatgatgatatatatgcatgtgatcaaagtatggcatggcacaggtttaaagtct |
117 |
Q |
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| T |
49773070 |
attccaacaatcagagggtcatggaatcgggacgaggattgagaatatgatgatat----gcatgtgatcaaagtatggcatggcacaggtttaaagtct |
49772975 |
T |
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| Q |
118 |
tgtagtataaaaatttaatgattggctttgggtaactgccaacaattcaatatgaatatatcgttttcttttcagtttatatttcattcatacacttaaa |
217 |
Q |
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| T |
49772974 |
tgtagtataaaaatttaatgattggctttgggtaactgccaacaattcaatatgaatatatcgttttcttttcagtttatatttcattcatacacttcaa |
49772875 |
T |
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| Q |
218 |
atttaagcataaagctagctagagtttgtagggtaacccatggtctcaacctattaacttgttgatttggttgtttt-nnnnnnnnncaagttgttgatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49772874 |
atttaagcataaagctagctagagtttgtagggtaacccatggtctcaacctattaacttgttgatttggttgttttaaaaaaaaaacaagttgttgatt |
49772775 |
T |
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| Q |
317 |
tggtgaatatatattgaaagagagagtgcagctatttaatagtcgactggggccattcctttg |
379 |
Q |
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| T |
49772774 |
tggtgaatatatattgaaagagagagtgcagctatttaatagtcgactggggccattcctttg |
49772712 |
T |
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