View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_1 (Length: 645)
Name: NF17878_low_1
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 12 - 629
Target Start/End: Complemental strand, 47137408 - 47136791
Alignment:
| Q |
12 |
cataggcaaaattatagttgagccactaaaatatctgaatcataaatggtgccaattcacggttcaaccggttgaatcgtctggtaagttcggtttttaa |
111 |
Q |
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| T |
47137408 |
catagggaaaattatagttgagccactaaaatatctgaatcataaatggtgccaattcacggttcaaccggttgaatcgtctggtaagttcggtttttaa |
47137309 |
T |
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| Q |
112 |
aaacattggtgtgaagtgtgagtggtatggtggtgactaaatttcatgtggattgctttgatcagggtctatgcaccggtgtggttattttgtggataag |
211 |
Q |
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| T |
47137308 |
aaacattggtgtgaagtgtgagtggtatggtggtgactaaatttcatgtggattgctttgatcagggtctatgcaccggtgtggttattttgtggataag |
47137209 |
T |
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| Q |
212 |
tggtggtaaaagctcgcatctactagtttttagtgaagatcnnnnnnnnatatatcttctacctcccatcatctttaatgccgggtaannnnnnngtacc |
311 |
Q |
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| T |
47137208 |
tggtggtaaaagctcgcatctactagtttttagtgaagatcttttttttatatatcttctacctcccatcatctttaatgccgggtaatttttttgtacc |
47137109 |
T |
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| Q |
312 |
atgctctatttatgtttgtttgattgaggaacacttgaaagtctttgttaaaatcttatgaaaatggtttatggtgtgttctgaatttgtttttagtata |
411 |
Q |
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| T |
47137108 |
atgctctatttatgtttgtttgattgaggaacacttgaaagtctttgttaaaatcttatgaaaatggtttatggtgtgttctgaatttgtttttagtata |
47137009 |
T |
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| Q |
412 |
tttcaatataaagtttatatgataggttgtggaaatagtttaactatgttctggtttcattatagaaatagcttatacataaatgtaatttatttcaggt |
511 |
Q |
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| T |
47137008 |
tttcaatataaagtttatatgataggttgtggaaatagtttaactatgttctggtttcattatagaaatagcttatacataactgtaatttatttcaggt |
47136909 |
T |
|
| Q |
512 |
ttcaggttaaaaagaagcggttttttgttaacttcataactatcatgtcgtttggtgctgttggtacattaataagttgtagcatcataacttttggtat |
611 |
Q |
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| T |
47136908 |
ttcaggttaaaaagaagcggttttttgttaacttcataactatcatgtcgtttggtgctgttggtacattaataagttgtagcatcataacttttggtat |
47136809 |
T |
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| Q |
612 |
gtccttcctctttatatg |
629 |
Q |
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| T |
47136808 |
gtccttcctctttatatg |
47136791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 585
Target Start/End: Original strand, 36489261 - 36489351
Alignment:
| Q |
495 |
tgtaatttatttcaggtttcaggttaaaaagaagcggttttttgttaacttcataactatcatgtcgtttggtgctgttggtacattaata |
585 |
Q |
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|||||| |||||||||||||| || || || |||| ||||||||| |||||||| ||||||| || ||||| ||| |||| ||||||||| |
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| T |
36489261 |
tgtaatatatttcaggtttcaagtaaagaaaaagcagttttttgtcaacttcatgactatcacatcatttggagctattggcacattaata |
36489351 |
T |
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