View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_11 (Length: 358)
Name: NF17878_low_11
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_11 |
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| [»] scaffold0602 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 8636729 - 8636894
Alignment:
| Q |
24 |
tacacctctcctaatttaatgttcaaaagattgggactgctcggcattccctcagagaaaatcttgaggagaggacattcatttacctctacttccattc |
123 |
Q |
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|||| ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
8636729 |
tacaactctcctcttttgatgtccaaaagattgggagtgctcggcattccctcagagaaaatctcgaggagaggacattcatttacctctac-----ttc |
8636823 |
T |
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| Q |
124 |
caccaagaatggaaggttaatacgggacttacatctagaaaacttgttaaggtttggcaaactatccaaca |
194 |
Q |
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| T |
8636824 |
caccaacaatggaaggtaaatgcgggacttacagctagaaaacttgttaagttttggcaaactttccaaca |
8636894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 187 - 343
Target Start/End: Complemental strand, 8622134 - 8621979
Alignment:
| Q |
187 |
atccaacatcaacattgtcctctgctgtaatgattgcttcaagtgagttacaacatttcaccttcttcacttcaagtttgccaagacttctccccataaa |
286 |
Q |
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|||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||| | |
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| T |
8622134 |
atccaacatcaacattgttctctactgtaatgatttcttcaagtgagttacaacctttcaccttcatcacttcaagcttgccaagacttttccccatgga |
8622035 |
T |
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| Q |
287 |
agaaataattaaacttgtcagtccattgcagtttggtaatctccaaatatattaagc |
343 |
Q |
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| T |
8622034 |
agatgtaattaaacttatcagtccattgcag-ttggtaatctccaaagatattaagc |
8621979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 8636916 - 8637071
Alignment:
| Q |
187 |
atccaacatcaacattgtcctctgctgtaatgattgcttcaagtgagttacaacatttcaccttcttcacttcaagtttgccaagacttctccccataaa |
286 |
Q |
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|||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| || ||||||| | |
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| T |
8636916 |
atccaaaatcaagattctcctctgctgtaatgattgcttcaagtgagttacaacctttcaccttcatcacttcaagcttgccaagaatttcccccataga |
8637015 |
T |
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| Q |
287 |
agaaataattaaacttgtcagtccattgcagtttggtaatctccaaatatattaagc |
343 |
Q |
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| T |
8637016 |
agatgtaattaaacttatcagtccattgcag-ttggtaatctccaaagatattaagc |
8637071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 8622324 - 8622159
Alignment:
| Q |
24 |
tacacctctcctaatttaatgttcaaaagattgggactgctcggcattccctcagagaaaatcttgaggagaggacattcatttacctctacttccattc |
123 |
Q |
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|||| ||||||| ||| |||| | ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| || |
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| T |
8622324 |
tacaactctcctcttttgatgtcccaaagattgggagtgctcagcattccctcggagaaaatcttgaggagaggacattcacttacctctac-----ctc |
8622230 |
T |
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| Q |
124 |
caccaagaatggaaggttaatacgggacttacatctagaaaacttgttaaggtttggcaaactatccaaca |
194 |
Q |
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| T |
8622229 |
caccaacaatggaaggtaaatgcgggacttagagctagaaaacttgttaaggtttggcaaactatccaaca |
8622159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 2313 - 2468
Alignment:
| Q |
187 |
atccaacatcaacattgtcctctgctgtaatgattgcttcaagtgagttacaacatttcaccttcttcacttcaagtttgccaagacttctccccataaa |
286 |
Q |
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|||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| || ||||||| | |
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| T |
2313 |
atccaaaatcaagattctcctctgctgtaatgattgcttcaagtgagttacaacctttcaccttcatcacttcaagcttgccaagaatttcccccataga |
2412 |
T |
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| Q |
287 |
agaaataattaaacttgtcagtccattgcagtttggtaatctccaaatatattaagc |
343 |
Q |
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| T |
2413 |
agatgtaattaaacttatcagtccattgcag-ttggtaatctccaaagatattaagc |
2468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 2122 - 2288
Alignment:
| Q |
24 |
tacacctctcctaatttaatgttcaaaagattgggactgctcggcattccctcagagaaaatcttgaggagaggacattcatttacctctacttccattc |
123 |
Q |
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|||| ||||||| ||| |||| | ||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| || |
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| T |
2122 |
tacaactctcctcttttgatgtcccaaagattgggagtgctcagcattccctcggagaaaatcttgaggagaggacattcacttacctctac-----ctc |
2216 |
T |
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| Q |
124 |
caccaagaatggaaggttaatacgggacttacatctagaaaacttgttaagg-tttggcaaactatccaaca |
194 |
Q |
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|||||| |||||||||| ||| ||||||||| | |||||||||||||||||| ||||||||||| ||||||| |
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| T |
2217 |
caccaacaatggaaggtaaatgcgggacttagagctagaaaacttgttaaggttttggcaaactttccaaca |
2288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 37290315 - 37290417
Alignment:
| Q |
241 |
atttcaccttcttcacttcaagtttgccaagacttctccccataaaagaaataattaaacttgtcagtccattgcagtttggtaatctccaaatatatta |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37290315 |
atttcaccttcttcacttcaagtttgccaagacttctccccatagaagaaataattaaacttgtcagtccattgcag-ttggtaatctccaaatatatta |
37290413 |
T |
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| Q |
341 |
agca |
344 |
Q |
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|||| |
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| T |
37290414 |
agca |
37290417 |
T |
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