View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_18 (Length: 291)
Name: NF17878_low_18
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 43894689 - 43894424
Alignment:
| Q |
15 |
acttattatgcagtctatattttaannnnnnnnccttccattttatagtttttgcgttcttaagattttgcaaactaaatatcattgaaaggaagttggc |
114 |
Q |
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| T |
43894689 |
acttattatgcagtctatattttaattttttt-ccttccattttatagtttttgcgttcttaagattttgcaaactaaatatcattgaaaggaagttggc |
43894591 |
T |
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| Q |
115 |
aaagtgcaccaccatgtggaccttgaaattttcatggatttgccgcttttatagatcacatactctttgttcaaattagatgactcacattctaacattg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43894590 |
gaagtgcaccaccatgtggaccttgaaattttcatggatttgccgcttttattgatcacatactctttgttcaaattagatgactcacattcgaacattg |
43894491 |
T |
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| Q |
215 |
tattttaacatataatacacgcggttaaatgcgagtcatttgattttgattagaggatctgcctttg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43894490 |
tattttaacatataatacacgcggttaaatgcgagtcatttgattttgattagaggatctgcctttg |
43894424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 44305121 - 44304856
Alignment:
| Q |
15 |
acttattatgcagtctatattttaannnnnnnnccttccattttatagtttttgcgttcttaagattttgcaaactaaatatcattgaaaggaagttggc |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44305121 |
acttattatgcagtctatattttaattttttt-ccttccattttatagtttttgcgttcttaagattttgcaaactaaatatcattgaaaggaagtaggc |
44305023 |
T |
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| Q |
115 |
aaagtgcaccaccatgtggaccttgaaattttcatggatttgccgcttttatagatcacatactctttgttcaaattagatgactcacattctaacattg |
214 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44305022 |
gaagtgcaccaccatgtggaccttaaaattttcatggatttgccgcttttatagatcacatactctttgttcaaattagatgactcacattataacattg |
44304923 |
T |
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| Q |
215 |
tattttaacatataatacacgcggttaaatgcgagtcatttgattttgattagaggatctgcctttg |
281 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44304922 |
tattttaacatataatacacgtggttaaatgcgagtcatttgattttgattagagaatctgcctttg |
44304856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 50 - 281
Target Start/End: Complemental strand, 44296034 - 44295795
Alignment:
| Q |
50 |
ttccattttatagtttttgcgttcttaagattttgcaaactaaatatcattgaaaggaagttggcaaagtgcaccaccatgtggaccttgaaattttca- |
148 |
Q |
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||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||| |||| ||||||| |||| | ||||||||| |
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| T |
44296034 |
ttccattttatagtttttgtgttcttaagattattcaaattaaatatcattgaaaggaagttggcaaggtgccccaccatttggattataaaattttcac |
44295935 |
T |
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| Q |
149 |
-----tggatttgccgcttttatagatcacatactctttgttc-aaattagatgactcacattctaacattgtattttaacatataatacacgcggtt-a |
241 |
Q |
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|| |||||| || |||| |||||||||||| |||| || || ||||||||||| ||||||| |||||||||||||||||||||| |||| ||| | |
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| T |
44295934 |
gcatttgcatttgctgcctttacagatcacatactatttgatcgaagttagatgactcgcattctaccattgtattttaacatataataaacgcagttca |
44295835 |
T |
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| Q |
242 |
aatgcgagtcatttgattttgattagaggatctgcctttg |
281 |
Q |
| |
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|||| |||| |||||||||||| ||| ||| |||||||| |
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| T |
44295834 |
aatgtaagtcgtttgattttgatcagacgatatgcctttg |
44295795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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