View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17878_low_19 (Length: 287)

Name: NF17878_low_19
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17878_low_19
NF17878_low_19
[»] chr1 (3 HSPs)
chr1 (112-270)||(41452778-41452936)
chr1 (1-42)||(46461308-46461349)
chr1 (1-42)||(46453907-46453948)
[»] chr2 (3 HSPs)
chr2 (112-271)||(33362779-33362938)
chr2 (1-42)||(33681591-33681632)
chr2 (1-42)||(33698648-33698689)
[»] chr7 (3 HSPs)
chr7 (1-42)||(9950119-9950160)
chr7 (1-44)||(9955106-9955149)
chr7 (1-42)||(32213796-32213837)
[»] chr6 (2 HSPs)
chr6 (1-42)||(14088006-14088047)
chr6 (1-42)||(14092538-14092579)
[»] chr8 (2 HSPs)
chr8 (2-42)||(24881252-24881292)
chr8 (1-42)||(24876766-24876807)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 41452936 - 41452778
Alignment:
Q  112 tggattcaccaagcgcgttctcaggagtgacatctatattatgagaactcttaaacgaagggtttcctgattctatgccctgaggatgcaatgatccatt 211  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41452936 tggattcaccaagcacgtgctcaggagtgacatctatattatgaaaactcttaaacgaagggtttcctgattctatgcccagaggatgcaatgatccatt 41452837  T
Q  212 atgtccattgaaatttgaatgtaatg-actgctactgccagctcccctttttagcacttt 270  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  41452836 atgtccattgaaatttgaatgtaatgaactgctactgccagct-ccctttttagcacttt 41452778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46461349 - 46461308
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46461349 attattctttgcactttccatctttagattattccatattta 46461308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46453948 - 46453907
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  46453948 attattctttgctctttctatctttagattattccatattta 46453907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 33362938 - 33362779
Alignment:
Q  112 tggattcaccaagcgcgttctcaggagtgacatctatattatgagaactcttaaacgaagggtttcctgattctatgccctgaggatgcaatgatccatt 211  Q
    |||||||||||| |  || |||||||||| |||  ||||||||||||||||||||| | |||||||||||||| |||||| || ||| | ||||||||||    
T  33362938 tggattcaccaaacaagtgctcaggagtggcattgatattatgagaactcttaaaccatgggtttcctgattccatgcccagaagatacgatgatccatt 33362839  T
Q  212 atgtccattgaaatttgaatgtaatg-actgctactgccagctcccctttttagcactttc 271  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||    
T  33362838 atgtccattgaaatttgaatggaatgaactgctactgccagct-cccttcttagcactttc 33362779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33681632 - 33681591
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33681632 attattctttgcactttccatctttagattattccatattta 33681591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33698689 - 33698648
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33698689 attattctttgcactttccatctttagattattccatattta 33698648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9950160 - 9950119
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9950160 attattctttgcactttccatctttagattattccatattta 9950119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9955149 - 9955106
Alignment:
Q  1 attattctttgcactttccatctttagattattccatatttact 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  9955149 attattctttgcactttccatctttaaattattccatatttact 9955106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32213796 - 32213837
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  32213796 attattctttacactttccatctttaaattattccatattta 32213837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14088006 - 14088047
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14088006 attattctttgcactttccatctttagattattccatattta 14088047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14092538 - 14092579
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  14092538 attattctttgcattttccatctttagattattccatattta 14092579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 24881252 - 24881292
Alignment:
Q  2 ttattctttgcactttccatctttagattattccatattta 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24881252 ttattctttgcactttccatctttagattattccatattta 24881292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24876766 - 24876807
Alignment:
Q  1 attattctttgcactttccatctttagattattccatattta 42  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  24876766 attattctttgcattttccatctttagattattccatattta 24876807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University