View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_21 (Length: 272)
Name: NF17878_low_21
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28090285 - 28090544
Alignment:
| Q |
1 |
cactgaatcccattacagtaataagaatgtactttaactttggacaagtttcaaccnnnnnnn----catgtgcttagtgaagcaccaaaccagtcttac |
96 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28090285 |
cactgaatcccattacagtaataagaatgtgctttaactttggacaagtttcaacaaaaaaaaaaaacatgtgcttagtgaagcaccaaaccagtcttac |
28090384 |
T |
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| Q |
97 |
tcttcaaagagtcgataaaggatagtatattgctattgcaaaacagtgattttgtcagcaacctagctgtctttgtgttgattaaacttcctctccaaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28090385 |
tcttcaaagagtcgataaaggatagtatattgctattgcaaaacagtgattttgtcagcaacctagctgtctttgtgttgattaaacttcctctccaaac |
28090484 |
T |
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| Q |
197 |
tactgagtcattgagcatgagtcttcggttcaacaaaaccagctctcagctcctcaaatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28090485 |
tactgagtcattgagcatgagtcttcggttcaacaaaaccagctctcagctcctcaaatg |
28090544 |
T |
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