View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_22 (Length: 272)
Name: NF17878_low_22
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34557675 - 34557930
Alignment:
| Q |
1 |
ttaaataatgagatattacgatgtcgatatataaattaaatttataattacctgttttctagcgctagaatcagctaatggtaaacttgagttatctgat |
100 |
Q |
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| T |
34557675 |
ttaaataatgagatattacgatgtcgatatataaactaaatttataattacctgttttctagcgctagaatcagctaatggtaaacttgagttatctgat |
34557774 |
T |
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| Q |
101 |
gtgtaaagagagtaaaatccattgtgtaactgcacatccgattgaggaccaaatataagtggtgcaggatccaaatcaatattaaagttttgaacccact |
200 |
Q |
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| T |
34557775 |
gtgtaaagagagtaaaatccattgtgtaactgcacatccgatttaggaccaaatataagtggtgcaggatccaaatcaatattaaagttttgaacccact |
34557874 |
T |
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| Q |
201 |
cagcaccctgaattgttcctctccaagcaacaactatgtccctcctccccaatgct |
256 |
Q |
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| T |
34557875 |
cagcaccctgaattgttcctctccaagcaacaactatgtccctcctccccaatgct |
34557930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 252
Target Start/End: Original strand, 34548454 - 34548662
Alignment:
| Q |
44 |
ataattacctgttttctagcgctagaatcagctaatggtaaacttgagttatctgatgtgtaaagagagtaaaatccattgtgtaactgcacatccgatt |
143 |
Q |
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| T |
34548454 |
ataactacctgttttctagcactagaatcagctgatggtaaacctgagttttcagatgtgtaaagggagtaaaatccgttgtgtatttgtacatttgatt |
34548553 |
T |
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| Q |
144 |
gaggaccaaatataagtggtgcaggatccaaatcaatattaaagttttgaacccactcagcaccctgaattgttcctctccaagcaacaactatgtccct |
243 |
Q |
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| T |
34548554 |
taggaccgaatattagtggtgcaggatccaaatcaatgttaaaattttgaacccactcagagccctggattgttcctctccaaacaacgactatgtccct |
34548653 |
T |
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| Q |
244 |
cctccccaa |
252 |
Q |
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| T |
34548654 |
cctccccaa |
34548662 |
T |
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