View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_26 (Length: 261)
Name: NF17878_low_26
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 41705286 - 41705048
Alignment:
| Q |
8 |
gagcagagaaccaaactgtggcgatccattctatagacttcgttgcgatcctcattctcaaaagctttactttgacactctcaatggcagttcctatgtt |
107 |
Q |
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| T |
41705286 |
gagcacagaaccaaactgtggcgatccattctatagacttcgttgtgatcctcattctcaaaagctttactttgacactctcaatggcagttcctatgtt |
41705187 |
T |
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| Q |
108 |
gtactaagaatcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggta |
207 |
Q |
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| T |
41705186 |
gtactaagagtcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggta |
41705087 |
T |
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| Q |
208 |
tttggttaaatcagtcacttcctttcaacataacttcat |
246 |
Q |
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| T |
41705086 |
tttggttaaatcagtcacttcctttcaacataacttcat |
41705048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 1453360 - 1453265
Alignment:
| Q |
125 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
220 |
Q |
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| T |
1453360 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 1465052 - 1464957
Alignment:
| Q |
125 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
220 |
Q |
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| T |
1465052 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
157 |
cttggttacccggttcatgtgtcacacaagacatgcc |
193 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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