View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_27 (Length: 257)
Name: NF17878_low_27
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5757420 - 5757662
Alignment:
| Q |
1 |
gcaatgtgaaggataatttctgcaacaacatgccacaactgattttggatacaacaaggattggaaaaactccttcttcagatgtttcttaaacagcttg |
100 |
Q |
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| T |
5757420 |
gcaatgtgaaggataatttctgcaacaacatgccacaactgattttggatacaacaaggattggaaaaactccttcttcagatgtttcttaaacagcttg |
5757519 |
T |
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| Q |
101 |
aattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5757520 |
aattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgtt |
5757619 |
T |
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| Q |
201 |
tgtggcacaattttgtaacactgtttgacacaatctttgtgcc |
243 |
Q |
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| T |
5757620 |
tgtggcacaattttgtaacactgtttgacacaatctttgtgcc |
5757662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6073693 - 6073450
Alignment:
| Q |
1 |
gcaatgtgaaggataatttctgcaacaacatgccacaactgatttt-ggatacaacaaggattggaaaaactccttcttcagatgtttcttaaacagctt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073693 |
gcaatgtgaaggataatttctgcaacaacatgccacaactgatttttggatacaacaaggattggaaaaactccttcttcagatgtttcttaaacagctt |
6073594 |
T |
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| Q |
100 |
gaattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073593 |
gaattcatcagagacagaaatccattttgtaaaagggtagctttttgttcagacatcatgatctacacttgaactcaaatttgacacttgattaggttgt |
6073494 |
T |
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| Q |
200 |
ttgtggcacaattttgtaacactgtttgacacaatctttgtgcc |
243 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6073493 |
ttgtggcacaattttgtaacactgtttgacacaatatttgtgcc |
6073450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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