View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_3 (Length: 507)
Name: NF17878_low_3
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 252 - 488
Target Start/End: Original strand, 34184855 - 34185090
Alignment:
| Q |
252 |
aagatatataataccattgataaagtcactgaaataatattagtatagtactaatgcttaatgatatatattaaggaaatacaaacaggtgtctgaatta |
351 |
Q |
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| T |
34184855 |
aagatatataataccattcataaagtcactgaaataatattagtatagtactaatgcttaatgatatatattaaggaaatacaaacaggtgtctgaatta |
34184954 |
T |
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| Q |
352 |
aacattgaacacaacattgaggttgaaattatttagctgtctcttccatgtagccggtggctcttcttgttaatatgtttactttattatatttctgaag |
451 |
Q |
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| T |
34184955 |
aacattgaacacaacattgaggttgaaattatttagctgtctcttccatgtagccggtggctcttcttgttaatatg-ttactttattatatttctgaag |
34185053 |
T |
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| Q |
452 |
tgtatgtgtagtgttcttttccttcttatgtgttaac |
488 |
Q |
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| T |
34185054 |
tgtatgtgtagtgttcttttccttcttatgtgttaac |
34185090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 34184692 - 34184850
Alignment:
| Q |
76 |
taatataattcaatgtaatcacatgtgtcagcgtcgtgtctgtattggacaccaaaacacgcatttaatcata----------------aagcaatcgca |
159 |
Q |
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| T |
34184692 |
taatataattcaatgtaatcacatgtgtcagcgtcgtgtctgtgttaaacaccaaaacacgcatttaatcataagtatctgtacaatagaggtaatcgca |
34184791 |
T |
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| Q |
160 |
gactcgttgctttccttctttttgttgtggcatataaacaattctccaaattagttgtga |
219 |
Q |
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| T |
34184792 |
gactcgttactttccttc-ttttgttgtggcatataaacaattctccaaattagttgtga |
34184850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 32638456 - 32638492
Alignment:
| Q |
79 |
tataattcaatgtaatcacatgtgtcagcgtcgtgtc |
115 |
Q |
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| T |
32638456 |
tataattgaatgtaatcacatgtgtcagtgtcgtgtc |
32638492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 34184632 - 34184672
Alignment:
| Q |
15 |
cacagacatagtcgttgaatatgatacagacatgtcgatat |
55 |
Q |
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| T |
34184632 |
cacagacatagtcgtcggatatgatccagacatgtcgatat |
34184672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 18512177 - 18512147
Alignment:
| Q |
76 |
taatataattcaatgtaatcacatgtgtcag |
106 |
Q |
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| T |
18512177 |
taatataattcaatgtaatcacatgtgtcag |
18512147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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