View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_30 (Length: 250)
Name: NF17878_low_30
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_30 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 41150755 - 41151004
Alignment:
| Q |
7 |
tccaagaaaatctccatccttaacaaattaactattaatatttgtctaatnnnnnnntgaatacgaaatcataattcatactactcttagtttatcaaaa |
106 |
Q |
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| T |
41150755 |
tccaacaaaatctccatccttaacaaattaactattaatatttgtctaataaaaaaatgaataagaaatcataattcatactactcttagtttatcaaaa |
41150854 |
T |
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| Q |
107 |
tagagaaatgacatttgtaa------tttattgcaatttttgaaataattctctcttttatactcttattgtgttattactctctccccgttgctttaat |
200 |
Q |
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| T |
41150855 |
tagagaaatgacattcgtaagatcattttattgcaatttttaaaacaattctctcttttatactcttattgagttattactctctcctcgttgctttgat |
41150954 |
T |
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| Q |
201 |
ttttatgtcaatacctatatttctttgtatatattttttgtccaataaat |
250 |
Q |
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| T |
41150955 |
ttttatgttaatacctatatttatttgtatatattttttgtccaataaat |
41151004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 41070912 - 41070953
Alignment:
| Q |
191 |
ttgctttaatttttatgtcaatacctatatttctttgtatat |
232 |
Q |
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| T |
41070912 |
ttgctttgatttttatgtcaatacctaaatttctttgtatat |
41070953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 10375752 - 10375785
Alignment:
| Q |
199 |
atttttatgtcaatacctatatttctttgtatat |
232 |
Q |
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| T |
10375752 |
atttttgtgtcaatacctatatttctttgtatat |
10375785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 8502927 - 8502831
Alignment:
| Q |
138 |
ttttgaaataattctctcttttatactcttattgtgttattact--ctctccccgttgctttaatttttatgtcaatacctatatttctttgtatat |
232 |
Q |
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| T |
8502927 |
ttttgaaataattttatctctcttactcatattgtgttcttactttctctctctattgctttgatttttatctcaatacataaatttctttgtatat |
8502831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 34456880 - 34456920
Alignment:
| Q |
191 |
ttgctttaatttttatgtcaatacctatatttctttgtata |
231 |
Q |
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| T |
34456880 |
ttgctttaatttttgtgccaatacctaaatttctttgtata |
34456920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 101881 - 101841
Alignment:
| Q |
191 |
ttgctttaatttttatgtcaatacctatatttctttgtata |
231 |
Q |
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| T |
101881 |
ttgctttgatttttatgtcactacctaaatttctttgtata |
101841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 2952696 - 2952596
Alignment:
| Q |
136 |
atttttgaaataattctctcttttatactcttattgtgttattactctctccccgttgctttaatttttatgtcaatacctatatttctttgtatatatt |
235 |
Q |
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| T |
2952696 |
atttttgaaacaattgcctctcttatactctcgtcgttttcttactctctcactatttctttggttttcatgtcaatacttatatttctttgtatgtatt |
2952597 |
T |
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| Q |
236 |
t |
236 |
Q |
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| T |
2952596 |
t |
2952596 |
T |
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