View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_34 (Length: 235)
Name: NF17878_low_34
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47592620 - 47592400
Alignment:
| Q |
1 |
agctatgtgtcgtccatcaaaaagaattcccttagaaaacaaaccatcatttatacatagaactttgtcataaaatcaaataaataaactttgtcatgtt |
100 |
Q |
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| T |
47592620 |
agctatgtgtcgtccatcaaaaagaattcccttagaaaacaaaccatcatttatacatagaactttgtcataaaatcaaataaataaactttgtcatgtt |
47592521 |
T |
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| Q |
101 |
ttctcaccttgtaaacttctccagatccacctttgccaatcttattttcatgtgaaaagttgtctgttgctgttctaattaagtccatttcaaattgcaa |
200 |
Q |
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| T |
47592520 |
ttctcaccttgtaaacttctccaaatccacctttgccaatcttgttttcatgtgaaaagttgtctgttgctgttctaattacgtccatttcaaattgcaa |
47592421 |
T |
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| Q |
201 |
accctctagagtggtactttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47592420 |
accctctagagtggtactttc |
47592400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 47606211 - 47606144
Alignment:
| Q |
106 |
accttgtaaacttctccagatccacctttgccaatcttattttcatgtgaaaagttgtctgttgctgt |
173 |
Q |
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| T |
47606211 |
accttgtaaacttctccaaatccaccttttccaatcttgttctcatgtgagaaattgtttgttgctgt |
47606144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 20232752 - 20232695
Alignment:
| Q |
106 |
accttgtaaacttctccagatccacctttgccaatcttattttcatgtgaaaagttgt |
163 |
Q |
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| T |
20232752 |
accttgtaaacttctccaaatccacctttgccaatgaaattttcacttgaaaagttgt |
20232695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 22126736 - 22126679
Alignment:
| Q |
106 |
accttgtaaacttctccagatccacctttgccaatcttattttcatgtgaaaagttgt |
163 |
Q |
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| T |
22126736 |
accttgtaaacttctccaaatccacctttgccaatgaaattttcacttgaaaagttgt |
22126679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 10402205 - 10402240
Alignment:
| Q |
105 |
caccttgtaaacttctccagatccacctttgccaat |
140 |
Q |
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| T |
10402205 |
caccttgtaaacttctccaaatccacctttgccaat |
10402240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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