View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17878_low_35 (Length: 235)

Name: NF17878_low_35
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17878_low_35
NF17878_low_35
[»] chr5 (9 HSPs)
chr5 (40-233)||(12904672-12904865)
chr5 (122-233)||(15645029-15645140)
chr5 (119-229)||(14849028-14849138)
chr5 (122-229)||(14848739-14848846)
chr5 (123-229)||(15644725-15644831)
chr5 (122-229)||(5326057-5326164)
chr5 (148-228)||(5326341-5326421)
chr5 (122-229)||(4700433-4700540)
chr5 (151-233)||(35920501-35920583)
[»] chr1 (10 HSPs)
chr1 (121-229)||(9443571-9443679)
chr1 (120-233)||(42267301-42267414)
chr1 (134-233)||(10304172-10304271)
chr1 (125-233)||(10303926-10304034)
chr1 (124-226)||(19227183-19227285)
chr1 (121-233)||(21444596-21444705)
chr1 (136-219)||(42267531-42267614)
chr1 (125-210)||(4566960-4567045)
chr1 (136-229)||(13245864-13245957)
chr1 (148-233)||(22103823-22103908)
[»] chr2 (11 HSPs)
chr2 (122-235)||(17266645-17266760)
chr2 (119-229)||(17266395-17266505)
chr2 (122-229)||(16105552-16105659)
chr2 (125-233)||(11721407-11721515)
chr2 (114-233)||(11349522-11349641)
chr2 (114-233)||(11689533-11689652)
chr2 (122-233)||(6846784-6846895)
chr2 (134-233)||(6848051-6848150)
chr2 (157-226)||(11689762-11689831)
chr2 (124-226)||(11721195-11721297)
chr2 (122-222)||(44364509-44364608)
[»] chr8 (14 HSPs)
chr8 (123-229)||(31873220-31873326)
chr8 (148-233)||(20050109-20050194)
chr8 (183-230)||(31872949-31872996)
chr8 (156-229)||(9499641-9499714)
chr8 (123-229)||(9499918-9500024)
chr8 (120-233)||(2535867-2535980)
chr8 (184-229)||(11754845-11754890)
chr8 (125-226)||(22890101-22890201)
chr8 (129-229)||(24085780-24085881)
chr8 (114-226)||(24085995-24086106)
chr8 (114-226)||(11291019-11291131)
chr8 (122-226)||(13084811-13084915)
chr8 (148-226)||(10794201-10794279)
chr8 (148-229)||(11291232-11291312)
[»] chr3 (12 HSPs)
chr3 (122-233)||(54317948-54318058)
chr3 (122-230)||(26479070-26479178)
chr3 (125-229)||(26479246-26479350)
chr3 (121-233)||(44654820-44654932)
chr3 (164-235)||(14633894-14633965)
chr3 (122-233)||(20704430-20704541)
chr3 (148-226)||(30381068-30381146)
chr3 (148-233)||(41987991-41988073)
chr3 (122-233)||(14634069-14634180)
chr3 (122-233)||(20704644-20704755)
chr3 (112-226)||(44654607-44654720)
chr3 (124-233)||(30380848-30380957)
[»] chr7 (8 HSPs)
chr7 (122-232)||(15714610-15714720)
chr7 (122-233)||(13311350-13311460)
chr7 (122-226)||(23608984-23609088)
chr7 (151-229)||(18670184-18670262)
chr7 (164-229)||(30128668-30128733)
chr7 (121-233)||(18855971-18856083)
chr7 (120-211)||(23608806-23608897)
chr7 (124-229)||(41075482-41075588)
[»] chr4 (4 HSPs)
chr4 (114-226)||(11857884-11857996)
chr4 (121-226)||(7280208-7280313)
chr4 (122-228)||(7280428-7280534)
chr4 (157-229)||(10203656-10203728)
[»] scaffold0181 (1 HSPs)
scaffold0181 (123-226)||(9427-9530)
[»] scaffold0291 (2 HSPs)
scaffold0291 (159-229)||(6749-6819)
scaffold0291 (118-229)||(6495-6606)
[»] chr6 (6 HSPs)
chr6 (134-226)||(1215019-1215111)
chr6 (147-226)||(13378550-13378629)
chr6 (151-233)||(26463208-26463290)
chr6 (122-222)||(22054124-22054223)
chr6 (165-229)||(12187777-12187841)
chr6 (157-233)||(31406913-31406989)
[»] scaffold0182 (1 HSPs)
scaffold0182 (124-226)||(31627-31728)
[»] scaffold0100 (1 HSPs)
scaffold0100 (125-226)||(31023-31124)
[»] scaffold0027 (1 HSPs)
scaffold0027 (164-229)||(14111-14176)
[»] scaffold0220 (1 HSPs)
scaffold0220 (122-229)||(23231-23338)
[»] scaffold0117 (1 HSPs)
scaffold0117 (120-233)||(15766-15878)
[»] scaffold0008 (1 HSPs)
scaffold0008 (120-233)||(239868-239981)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 12904672 - 12904865
Alignment:
Q  40 gataaaaatttgtaagaagaagagtggaaaaattgtgatttctcctaagtcatctatttatataggattatcaattttatttggcttttatatctgttta 139  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12904672 gataaaaatttgtaagaagaacagttgaaaagttgtgatttctcctaaatcatatatttatataggattatcaattttatttggcttttatatctgttta 12904771  T
Q  140 gtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    ||| ||| ||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  12904772 gtccctctaaatagggatcatttaaaaaatggtccctgtattcgttaatcctgacaatttgtcctcccaaaatttaataatttaaaatttcgtc 12904865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 15645140 - 15645029
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||||  || |||||  || |||||| |||| |||| | ||||||||||||| |||||| |||| ||||||||||||||||||||    
T  15645140 ggcttttatatgtgtttagttcctgcaaatgtgggtcatttaaaaattggtttatgtattcgttaatcctgacattttgccctcccaaaatttaatcatt 15645041  T
Q  222 taaaatttcgtc 233  Q
    ||||||||||||    
T  15645040 taaaatttcgtc 15645029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 14849138 - 14849028
Alignment:
Q  119 tttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatc 218  Q
    |||||||||||||| |||||||||  || ||||||||||||||| ||||||||||  ||||||| |||||  || || |||| ||| |||||||||||||    
T  14849138 tttggcttttatatgtgtttagtccttctaaatagggatcatttaaaaaatggtccatgtattccttaatcgtggcattttgccctaccaaaatttaatc 14849039  T
Q  219 atttaaaattt 229  Q
    |||||||||||    
T  14849038 atttaaaattt 14849028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 14848739 - 14848846
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||||| || |||||||||||||||| ||||||||| | || |||| ||||| ||  || |||  ||||||||||||||||||||    
T  14848739 ggcttttatatgtgtttagtccctgcaaatagggatcatttaaaaaatggtttgtgcattccttaatccttgcatttttccctcccaaaatttaatcatt 14848838  T
Q  222 taaaattt 229  Q
    ||||||||    
T  14848839 taaaattt 14848846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 15644725 - 15644831
Alignment:
Q  123 gcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattt 222  Q
    |||||||||| ||||||||| ||  |||||| | |||||| ||||||| || | |||||| ||||| |||||| ||| |||||||||||||||||||||     
T  15644725 gcttttatatgtgtttagtccctgtaaatagaggtcatttaaaaaatgatccccgtattccttaatcctgacattttttcctcccaaaatttaatcattc 15644824  T
Q  223 aaaattt 229  Q
    |||||||    
T  15644825 aaaattt 15644831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 5326057 - 5326164
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| |||||| || || ||||||||| |||||| |||||||||| ||| |||| ||||| ||| || |||| |||  |||||||||||| ||    
T  5326057 ggcttttatatgtgtttaatccctgcaaataggggtcatttaaaaaatggtccctgcattccttaatcctggcattttgccctttcaaaatttaatcttt 5326156  T
Q  222 taaaattt 229  Q
    ||||||||    
T  5326157 taaaattt 5326164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 5326421 - 5326341
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatt 228  Q
    |||||||| |||||| ||||||||||  || |||| |||||  || || ||||||||||||||||||||| ||||||||||    
T  5326421 aaataggggtcatttaaaaaatggtccatgcattccttaatcatggcattttgtcctcccaaaatttaataatttaaaatt 5326341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 4700540 - 4700433
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||| |||  |  |||||||| |||||| ||||||| |   ||||||| |||||| |||||||||  ||| ||||||||| ||||||    
T  4700540 ggcttttatatgtgtttcgtccttataaataggggtcatttaaaaaatgattcttgtattcattaattatgacaattttcccttccaaaattttatcatt 4700441  T
Q  222 taaaattt 229  Q
    ||||||||    
T  4700440 taaaattt 4700433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 35920583 - 35920501
Alignment:
Q  151 tagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    ||||| || ||| |||| ||||| ||||| ||| |||| |||||||||| |||| |||   ||||||||||||||||||||||    
T  35920583 taggggtcgtttaaaaattggtccctgtaatcgctaatcctgacaatttatccttccattgtttaatcatttaaaatttcgtc 35920501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 9443571 - 9443679
Alignment:
Q  121 tggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    |||||||||||| |||||||||  | ||||||||| |||||| ||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||    
T  9443571 tggcttttatatgtgtttagtccttgcaaataggggtcatttaaaaaatggtctctgtattccttaatcctggcattttgtcctcccaaaatttaatcat 9443670  T
Q  221 ttaaaattt 229  Q
    |||||||||    
T  9443671 ttaaaattt 9443679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 42267301 - 42267414
Alignment:
Q  120 ttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatca 219  Q
    ||||||||||||| |||||| || || ||||||||| |||||| |||| ||||| |||||||| ||||| ||||||||||||||| ||||||||||||||    
T  42267301 ttggcttttatatgtgtttattccctgcaaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatca 42267400  T
Q  220 tttaaaatttcgtc 233  Q
    ||||| ||||||||    
T  42267401 tttaatatttcgtc 42267414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 10304271 - 10304172
Alignment:
Q  134 tgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    ||||||||| || ||||||||| |||||| ||||||||||  ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  10304271 tgtttagtccctgcaaataggggtcatttaaaaaatggtcaatgtattcgttaattctggcaatttgccttcccaaaatttaatcatttaaaatttcgtc 10304172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 10303926 - 10304034
Alignment:
Q  125 ttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaa 224  Q
    |||||||| ||||| |||||| ||||||||  |||||| ||||||| ||| ||||||||||||| ||| ||||||| ||| |||||||||||||||||||    
T  10303926 ttttatatgtgtttggtctctgcaaataggagtcatttaaaaaatgatctatgtattcgttaatcctggcaatttgcccttccaaaatttaatcatttaa 10304025  T
Q  225 aatttcgtc 233  Q
    |||||||||    
T  10304026 aatttcgtc 10304034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 19227285 - 19227183
Alignment:
Q  124 cttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattta 223  Q
    ||||||||| |||||||||||| |||||| || |||||| |||||| |||  ||||||| ||||| |||||| |||| ||| |||||||||||||| |||    
T  19227285 cttttatatgtgtttagtctctacaaataagggtcatttaaaaaatagtccttgtattccttaatcctgacattttgccctgccaaaatttaatcactta 19227186  T
Q  224 aaa 226  Q
    |||    
T  19227185 aaa 19227183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 21444596 - 21444705
Alignment:
Q  121 tggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    |||||||||||| |||||||||   | |||||||||| |||| |||| |||||  ||||||| |||||| || || ||| ||||  |||||||||||||     
T  21444596 tggcttttatatatgtttagtc---ctaaatagggattatttaaaaattggtccttgtattctttaattttggcattttatcctatcaaaatttaatcac 21444692  T
Q  221 ttaaaatttcgtc 233  Q
    |||||||||||||    
T  21444693 ttaaaatttcgtc 21444705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 42267614 - 42267531
Alignment:
Q  136 tttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatca 219  Q
    ||||||| || ||||||  | |||||| ||||||||||||||||||| ||||| ||| || |||| ||| ||||||||||||||    
T  42267614 tttagtccctgcaaataaaggtcatttaaaaaatggtctctgtattccttaatcctggcattttgccctaccaaaatttaatca 42267531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 4566960 - 4567045
Alignment:
Q  125 ttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaa 210  Q
    |||||||| ||||| ||| || |||||| |  |||||| ||||||||||||| ||||||||||| |||||||| | ||||| ||||    
T  4566960 ttttatatgtgtttcgtccctacaaatatgagtcatttaaaaaatggtctctttattcgttaatcctgacaatctatcctcacaaa 4567045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 13245864 - 13245957
Alignment:
Q  136 tttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    ||||||| || ||||||||  |||||| |||| |||||  ||||||| ||||| ||| || |||  ||| |||||||||||||| |||||||||    
T  13245864 tttagtccctgcaaataggattcatttaaaaattggtccttgtattccttaatcctggcattttaccctgccaaaatttaatcacttaaaattt 13245957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 22103908 - 22103823
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    |||||||| |||||| ||||||||||  ||||||  ||||| |||  | |||| |||  ||||||||||||| |||||||||||||    
T  22103908 aaataggggtcatttaaaaaatggtccatgtattttttaatcctgctattttgccctgtcaaaatttaatcacttaaaatttcgtc 22103823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 17266760 - 17266645
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaataggga-tcattttaaaaa-tggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatca 219  Q
    ||||||||||| ||||||||  || |||||||||  |||||| ||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  17266760 ggcttttatatgtgtttagttcctgcaaatagggggtcatttaaaaaaatggtctctgtattcgttaatcttgacaatttgccctcccaaaatttaatca 17266661  T
Q  220 tttaaaatttcgtcat 235  Q
    ||||||||||||||||    
T  17266660 tttaaaatttcgtcat 17266645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 17266395 - 17266505
Alignment:
Q  119 tttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatc 218  Q
    |||||||||||||| ||||||||| ||  ||||||||||||||| ||||||||||  |||||||||| || ||||||||||  ||| |||||||||||||    
T  17266395 tttggcttttatatgtgtttagtccctgtaaatagggatcatttaaaaaatggtcaatgtattcgtttatcctgacaattttcccttccaaaatttaatc 17266494  T
Q  219 atttaaaattt 229  Q
    |||||||||||    
T  17266495 atttaaaattt 17266505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 16105552 - 16105659
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||||| ||  ||||||||  ||||| |||||||||| ||| |||| ||||| |||||| |||| ||||||||||||||||||||    
T  16105552 ggcttttatatgtgtttagtccctgtaaataggggccatttaaaaaatggtccctgcattccttaatcctgacattttgccctcccaaaatttaatcatt 16105651  T
Q  222 taaaattt 229  Q
    ||||||||    
T  16105652 taaaattt 16105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 11721515 - 11721407
Alignment:
Q  125 ttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaa 224  Q
    |||||||| |||||||||| |  |||||||| |||||| |||| || || |||||||| ||||| |||||| ||| |||| |||||||||||||| ||||    
T  11721515 ttttatatgtgtttagtctttggaaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcacttaa 11721416  T
Q  225 aatttcgtc 233  Q
    |||||||||    
T  11721415 aatttcgtc 11721407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 11349641 - 11349522
Alignment:
Q  114 ttttatttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatt 213  Q
    ||||||||||||||||||| ||||||||| |  ||||||||  |||||| |||  || ||| || |||||||||| |||||| ||||| |    ||||||    
T  11349641 ttttatttggcttttatatgtgtttagtcccagcaaataggagtcatttaaaatttgatctttgaattcgttaatcctgacagtttgtacctataaaatt 11349542  T
Q  214 taatcatttaaaatttcgtc 233  Q
    ||||||||||||||||||||    
T  11349541 taatcatttaaaatttcgtc 11349522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 11689533 - 11689652
Alignment:
Q  114 ttttatttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatt 213  Q
    |||| ||||| |||||||| |||||||||  |  |||||||| |||||| |||| || || |||||||| ||||| | | || |||||||| ||||||||    
T  11689533 ttttttttgggttttatatgtgtttagtccttggaaataggggtcatttaaaaattgatccctgtattctttaatcccggcattttgtcctgccaaaatt 11689632  T
Q  214 taatcatttaaaatttcgtc 233  Q
    |||||| |||||||||||||    
T  11689633 taatcacttaaaatttcgtc 11689652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 6846784 - 6846895
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| |||||| || || ||||||||| |||||| |||| |||||  || |||||||||| | | || |||||||   ||||||| |||||||    
T  6846784 ggcttttatatgtgtttaatccctgcaaataggggtcatttaaaaattggtccttgaattcgttaatccgggcattttgtccctgcaaaattgaatcatt 6846883  T
Q  222 taaaatttcgtc 233  Q
    ||||||||||||    
T  6846884 taaaatttcgtc 6846895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 6848150 - 6848051
Alignment:
Q  134 tgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    |||||| ||||| |||||| || |||||| |||| |||||  || |||||||||| |||||| |||||||    ||||||||||||||||||||||||||    
T  6848150 tgtttactctctgcaaataagggtcatttaaaaattggtcattgaattcgttaatcctgacattttgtccctgaaaaatttaatcatttaaaatttcgtc 6848051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 11689831 - 11689762
Alignment:
Q  157 tcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaa 226  Q
    |||||| ||||||||||| ||||||| ||||| ||  ||||||||||| |||||||||||||| ||||||    
T  11689831 tcatttaaaaaatggtctttgtattctttaatcctagcaatttgtcctgccaaaatttaatcacttaaaa 11689762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 11721195 - 11721297
Alignment:
Q  124 cttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattta 223  Q
    ||||||||| |||||||||  |  |||||||| |||||| ||||||| ||  ||||||| ||||| ||  || |||| ||| |||||||||||||| |||    
T  11721195 cttttatatatgtttagtccttggaaataggggtcatttaaaaaatgatccttgtattctttaatcctagcattttgccctgccaaaatttaatcactta 11721294  T
Q  224 aaa 226  Q
    |||    
T  11721295 aaa 11721297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 44364608 - 44364509
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctc-tgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    ||||||||||| | |||||||| | |||||||||||| ||| | |||||  ||| |||||| |||||| ||| ||||||| |||| ||||||||||||||    
T  44364608 ggcttttatatgtttttagtct-tgcaaatagggatcttttaataaatga-ctcatgtatttgttaatcctggcaatttgccctcgcaaaatttaatcat 44364511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 31873326 - 31873220
Alignment:
Q  123 gcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattt 222  Q
    |||||||||| ||||||||| || |||||| || |||||| ||||||||||  | |||||||||||  || ||||||| |||||||||||||||||||||    
T  31873326 gcttttatatgtgtttagtccctgcaaatatgggtcatttaaaaaatggtccttttattcgttaatcttggcaatttgccctcccaaaatttaatcattt 31873227  T
Q  223 aaaattt 229  Q
    |||||||    
T  31873226 aaaattt 31873220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 20050109 - 20050194
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    |||||||| |||||| |||| |||||  ||||||| ||||||||| || |||| ||| |||||||||||||| |||||||||||||    
T  20050109 aaataggggtcatttaaaaattggtccatgtattccttaattctggcattttgccctgccaaaatttaatcacttaaaatttcgtc 20050194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 31872949 - 31872996
Alignment:
Q  183 gttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttc 230  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  31872949 gttaatcctgacaatttatcctcccaaaatttaatcatttaaaatttc 31872996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 9499641 - 9499714
Alignment:
Q  156 atcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    ||||||| ||||||||||  ||||||| ||||||||| || |||||| || |||| ||||||||||||||||||    
T  9499641 atcatttaaaaaatggtccatgtattccttaattctggcattttgtcatcgcaaagtttaatcatttaaaattt 9499714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 9500024 - 9499918
Alignment:
Q  123 gcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattt 222  Q
    |||||| ||| |||||||||  | ||||||||| ||  || |||||||||   ||||||  ||||| |||||| |||  |||||||||||||||||||||    
T  9500024 gcttttgtatgtgtttagtccttacaaataggggtcgattaaaaaatggttcatgtatttcttaatcctgacattttaccctcccaaaatttaatcattt 9499925  T
Q  223 aaaattt 229  Q
    |||||||    
T  9499924 aaaattt 9499918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 2535980 - 2535867
Alignment:
Q  120 ttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatca 219  Q
    |||||||| |||| | ||| ||| || ||| ||||| |||||| |||| ||||| ||||| |||||||| ||| ||| ||  |||  |||| ||||||||    
T  2535980 ttggctttaatatgtatttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattacccttacaaagtttaatca 2535881  T
Q  220 tttaaaatttcgtc 233  Q
    ||||||||||||||    
T  2535880 tttaaaatttcgtc 2535867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 11754890 - 11754845
Alignment:
Q  184 ttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||    
T  11754890 ttaattctgacattttaccctcccaaaatttaatcatttaaaattt 11754845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 22890101 - 22890201
Alignment:
Q  125 ttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaa 224  Q
    |||||||| ||||||||| |   |||||||| |||||| ||||||||||| ||||||| |||||  ||||| |||||||   ||||||||||||| ||||    
T  22890101 ttttatatgtgtttagtcccggtaaataggggtcatttaaaaaatggtct-tgtattccttaatcatgacattttgtcccgtcaaaatttaatcacttaa 22890199  T
Q  225 aa 226  Q
    ||    
T  22890200 aa 22890201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 24085780 - 24085881
Alignment:
Q  129 atatctgtttagtctctccaaatag-ggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaat 227  Q
    |||| ||||||||| || ||||||| || |||| | ||||||||||  ||||||  ||||| |||||| |||||||| |||||||||||||  |||||||    
T  24085780 atatgtgtttagtccctgcaaatagagggtcatataaaaaatggtccttgtatttcttaatcctgacattttgtcctgccaaaatttaatcgcttaaaat 24085879  T
Q  228 tt 229  Q
    ||    
T  24085880 tt 24085881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 24086106 - 24085995
Alignment:
Q  114 ttttatttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctc-tgtattcgttaattctgacaatttgtcctcccaaaat 212  Q
    ||||||||||||||||||  ||||||||| || ||||||||| |||||| |||||||| ||| |||| || |||||| ||| | ||||||||   |||||    
T  24086106 ttttatttggcttttatagatgtttagtc-ctgcaaataggggtcatttaaaaaatgg-ctcatgtaatccttaattttgatattttgtcctattaaaat 24086009  T
Q  213 ttaatcatttaaaa 226  Q
    ||||||| ||||||    
T  24086008 ttaatcacttaaaa 24085995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 11291019 - 11291131
Alignment:
Q  114 ttttatttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatt 213  Q
    ||||||| ||||||||||  ||||||||  || ||||||||  |||||| |||||||||   ||||||| ||||| |||| | |||| | | ||||||||    
T  11291019 ttttattaggcttttatacgtgtttagttcctacaaataggagtcatttaaaaaatggttcttgtattccttaatcctgatattttgccatgccaaaatt 11291118  T
Q  214 taatcatttaaaa 226  Q
    |||||| ||||||    
T  11291119 taatcacttaaaa 11291131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 13084915 - 13084811
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| |||||||||||| |||||| |  |||||| |||| |||||  ||||||| |||||  ||  | |||| ||| |||||||||||||| |    
T  13084915 ggcttttatatgtgtttagtctctgcaaatatgagtcatttaaaaattggtccatgtattccttaatcttggaattttgccctgccaaaatttaatcact 13084816  T
Q  222 taaaa 226  Q
    |||||    
T  13084815 taaaa 13084811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 10794201 - 10794279
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaa 226  Q
    ||||||||||||||| ||||||| ||  | ||||| |||||| ||||| ||| |||| ||||| |||||||| ||||||    
T  10794201 aaatagggatcatttaaaaaatgatcattatattccttaattatgacattttatcctgccaaagtttaatcacttaaaa 10794279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 11291312 - 11291232
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    |||||||| |||||| ||||||||||| ||||||| |||| |||| || |||| | |  ||||||||||||| |||||||||    
T  11291312 aaataggggtcatttaaaaaatggtctatgtattctttaa-tctggcattttgccttatcaaaatttaatcacttaaaattt 11291232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 54318058 - 54317948
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| |||||||||  | |||||| |  |||||| | ||||||||  ||||||||||||| ||||||||||  ||||||||||||||||||||    
T  54318058 ggcttttatatgtgtttagtccttgcaaatatgagtcatttaagaaatggtccatgtattcgttaatactgacaattta-cctcccaaaatttaatcatt 54317960  T
Q  222 taaaatttcgtc 233  Q
    ||||||||||||    
T  54317959 taaaatttcgtc 54317948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 26479070 - 26479178
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||||| || ||||||||| | |||| ||||||||||  |||| |||||||| |||||||| || ||||||||| |||| ||| |    
T  26479070 ggcttttatatgtgtttagtccctgcaaataggggtgatttaaaaaatggtccatgtaatcgttaatcctgacaatctgacctcccaaagtttagtcact 26479169  T
Q  222 taaaatttc 230  Q
    |||||||||    
T  26479170 taaaatttc 26479178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 26479350 - 26479246
Alignment:
Q  125 ttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaa 224  Q
    |||||||| ||||||||| ||  |||||||| |||||| |||||||||||||||| || |||||  || |||  || ||||||||| |||||||| ||||    
T  26479350 ttttatatgtgtttagtccctgtaaataggggtcatttaaaaaatggtctctgtaatccttaatcgtggcaacctgccctcccaaagtttaatcacttaa 26479251  T
Q  225 aattt 229  Q
    |||||    
T  26479250 aattt 26479246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 44654932 - 44654820
Alignment:
Q  121 tggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    |||||||||||| ||||||||| || ||||||||| |||||| |||| | |||  ||||||| | |||  || || |||| ||| ||||||||||||||     
T  44654932 tggcttttatatgtgtttagtccctgcaaataggggtcatttaaaaatttgtccatgtattcctaaatcatggcattttggcctgccaaaatttaatcac 44654833  T
Q  221 ttaaaatttcgtc 233  Q
    |||||||||||||    
T  44654832 ttaaaatttcgtc 44654820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 14633894 - 14633965
Alignment:
Q  164 aaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtcat 235  Q
    ||||||||||| ||||||| ||||| |||||| |||||||| |||||||||||||| |||||| || |||||    
T  14633894 aaaaatggtctatgtattctttaatcctgacattttgtcctaccaaaatttaatcacttaaaaattggtcat 14633965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 20704430 - 20704541
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||||| || |||||| |  |||||| |||||||||  || ||||| |||||  ||||| |||| ||| |||||||||||||| |    
T  20704430 ggcttttatatgtgtttagtccctgcaaataagagtcatttaaaaaatggttcctatattccttaatcttgacattttgccctgccaaaatttaatcact 20704529  T
Q  222 taaaatttcgtc 233  Q
    ||||||| ||||    
T  20704530 taaaattccgtc 20704541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 30381146 - 30381068
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaa 226  Q
    |||||||  |||||| ||||||||||  ||||||| ||||||||| || |||| ||| |||||||||||||||||||||    
T  30381146 aaataggagtcatttaaaaaatggtccatgtattctttaattctggcattttgccctgccaaaatttaatcatttaaaa 30381068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 41987991 - 41988073
Alignment:
Q  148 aaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    |||||||| |||||| ||||||||| |||||  ||||||||| |  ||||||| |||| |||||||||||||||||||||||||||    
T  41987991 aaataggg-tcatttaaaaaatggtttctgt--tcgttaattttagcaatttgccctcgcaaaatttaatcatttaaaatttcgtc 41988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 14634180 - 14634069
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| |||||||||  | ||||||||| |||||| |||| ||||| |||||||| |||||   | || |||| ||| |||||||||||||| |    
T  14634180 ggcttttatatatgtttagtccttgcaaataggggtcatttaaaaattggtccctgtattccttaatcgaggcattttgccctgccaaaatttaatcact 14634081  T
Q  222 taaaatttcgtc 233  Q
     ||| |||||||    
T  14634080 aaaactttcgtc 14634069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 20704755 - 20704644
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||| | || ||||||||||| |||| |||||||||   ||||||  ||||| |||  | ||||  || |||||||||||||| |    
T  20704755 ggcttttatatgtgtttagcccctgcaaatagggattatttaaaaaatggttcatgtatttcttaatcctggtattttgctctgccaaaatttaatcact 20704656  T
Q  222 taaaatttcgtc 233  Q
    ||||||||||||    
T  20704655 taaaatttcgtc 20704644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 44654607 - 44654720
Alignment:
Q  112 aattttatttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaa 211  Q
    |||||| || ||||||||||| ||||||||| ||  |||||||| |||||| ||||||||||  ||||||  ||||||| | || ||| ||||  |||||    
T  44654607 aatttttttaggcttttatatgtgtttagtccctgtaaataggggtcatttaaaaaatggtccatgtatttcttaattcaggcattttttcct-gcaaaa 44654705  T
Q  212 tttaatcatttaaaa 226  Q
    |||||||| ||||||    
T  44654706 tttaatcacttaaaa 44654720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 30380848 - 30380957
Alignment:
Q  124 cttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattta 223  Q
    ||||||||| |||||||| |||  |||||||  |||||| |||| |||| | ||| ||  ||||| |||| | |||||| |  |||||||||||||||||    
T  30380848 cttttatatgtgtttagtttctgtaaataggagtcatttaaaaattggtttttgtttttcttaatcctgatattttgtcatgtcaaaatttaatcattta 30380947  T
Q  224 aaatttcgtc 233  Q
    ||||||||||    
T  30380948 aaatttcgtc 30380957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 15714720 - 15714610
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||||| || ||||||||| |||||| |||| ||||||||| |||| ||||| |||||| |||| ||| |||| ||||||||| |    
T  15714720 ggcttttatatgtgtttagtccctgcaaataggggtcatttaaaaattggtctctgcattccttaatcctgacattttgccctgccaagatttaatcact 15714621  T
Q  222 taaaatttcgt 232  Q
    ||| |||||||    
T  15714620 taacatttcgt 15714610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 13311460 - 13311350
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||  ||||||||| || ||||||||| |||||| || ||||||   |||||||||||||  | |||||||| ||| |||||||||||| |||    
T  13311460 ggcttttatacatgtttagtc-ctacaaataggggtcatttaaacaatggttcatgtattcgttaatcttaacaatttgcccttccaaaatttaataatt 13311362  T
Q  222 taaaatttcgtc 233  Q
    ||||||||||||    
T  13311361 taaaatttcgtc 13311350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 23609088 - 23608984
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| |||||| || || |||||||||||||||| |||||||||| || ||||| ||||| |||||| ||||   |  ||||||||||||| |    
T  23609088 ggcttttatatgtgtttaatccctgcaaatagggatcatttaaaaaatggtccctatattccttaatcctgacattttgcattgtcaaaatttaatcact 23608989  T
Q  222 taaaa 226  Q
    |||||    
T  23608988 taaaa 23608984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 18670262 - 18670184
Alignment:
Q  151 tagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    ||||| || ||| |||||||||| |||||||||||||| ||  ||||||| ||||||||| |||||||| |||||||||    
T  18670262 taggggtcgtttaaaaaatggtccctgtattcgttaatccttgcaatttgccctcccaaagtttaatcacttaaaattt 18670184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 30128733 - 30128668
Alignment:
Q  164 aaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    |||||||||| || ||||||||||||||  ||||||  ||||||||| |||||||| |||||||||    
T  30128733 aaaaatggtccctatattcgttaattcttgcaatttaccctcccaaagtttaatcacttaaaattt 30128668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 18856083 - 18855971
Alignment:
Q  121 tggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    ||||||| |||| ||||| ||| || ||| ||||| |||||| |||| ||||| ||||| ||||||||  || ||| ||  |||  |||| |||||||||    
T  18856083 tggctttgatatatgtttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcttggcaaattacccttgcaaagtttaatcat 18855984  T
Q  221 ttaaaatttcgtc 233  Q
    |||||||||||||    
T  18855983 ttaaaatttcgtc 18855971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 23608806 - 23608897
Alignment:
Q  120 ttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaa 211  Q
    ||||||||||||| |||||||||  | ||||||||| |||||| |||| ||||| |||||||  ||||| ||| || |||| ||| ||||||    
T  23608806 ttggcttttatatgtgtttagtccttgcaaataggggtcatttaaaaattggtccctgtatttcttaatcctggcattttgccctgccaaaa 23608897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 41075482 - 41075588
Alignment:
Q  124 cttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtat--tcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||| ||||||||| ||  ||||| || |||||| |||||| ||||||||||  || ||||| |   || || |||||||||||||| |||||||    
T  41075482 cttttatatgtgtttagtc-ctttaaatatgggtcatttaaaaaattgtctctgtatattccttaatccacgcatttggtcctcccaaaattaaatcatt 41075580  T
Q  222 taaaattt 229  Q
    ||||||||    
T  41075581 taaaattt 41075588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 11857884 - 11857996
Alignment:
Q  114 ttttatttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatt 213  Q
    |||| |||||||||||||| ||||||||| || ||||||| | |||||| |||||||||| |||||||| ||||| ||| || ||||  || ||||||||    
T  11857884 ttttttttggcttttatatgtgtttagtccctgcaaatagaggtcatttaaaaaatggtccctgtattccttaatcctggcattttgctctgccaaaatt 11857983  T
Q  214 taatcatttaaaa 226  Q
    |||||| ||||||    
T  11857984 taatcacttaaaa 11857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 7280208 - 7280313
Alignment:
Q  121 tggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    |||||||||||| |||||||||  |  |||||||| |||||| ||||||||||||||||||| ||||| ||| || |||| |||  |||||||||||||     
T  7280208 tggcttttatatatgtttagtccttgtaaataggggtcatttaaaaaatggtctctgtattctttaatcctgtcattttgccctgtcaaaatttaatcac 7280307  T
Q  221 ttaaaa 226  Q
    ||||||    
T  7280308 ttaaaa 7280313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 7280534 - 7280428
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    ||||||||||| ||||||    || |||||||| |||||||||| |||||||  ||||||| |||||||||||| |||| | |  ||||||||||||| |    
T  7280534 ggcttttatatgtgtttatatcctgcaaataggaatcattttaataatggtccttgtattctttaattctgacattttgccatgtcaaaatttaatcact 7280435  T
Q  222 taaaatt 228  Q
    |||||||    
T  7280434 taaaatt 7280428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 10203656 - 10203728
Alignment:
Q  157 tcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    |||||| |||| | ||| ||||| |||||||||||||||| || ||||   ||||||||||||||||||||||    
T  10203656 tcatttaaaaattagtcactgtaatcgttaattctgacaaattatccttataaaatttaatcatttaaaattt 10203728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 9530 - 9427
Alignment:
Q  123 gcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattt 222  Q
    |||||||||| ||||||||| ||||||| ||||||||||| |||||||||| || ||||| ||||| |||  | ||||||||  ||||||||||||| ||    
T  9530 gcttttatatgtgtttagtccctccaaacagggatcatttaaaaaatggtccctatattccttaatcctggtattttgtcctgtcaaaatttaatcactt 9431  T
Q  223 aaaa 226  Q
    ||||    
T  9430 aaaa 9427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 6819 - 6749
Alignment:
Q  159 attttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    |||| ||||||||||||||||||  ||| |||||||| |||  ||||||||||||||||||||||||||||    
T  6819 atttaaaaaatggtctctgtatttattatttctgacattttaccctcccaaaatttaatcatttaaaattt 6749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 6495 - 6606
Alignment:
Q  118 atttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaat 217  Q
    ||||||||||||||| || |||||| |  ||||||||| |||||| ||||||||||  ||||||  ||||| ||| || ||||  |||||||| ||||||    
T  6495 atttggcttttatatgtgattagtcccagcaaataggggtcatttaaaaaatggtccatgtatttcttaatcctggcattttgcgctcccaaattttaat 6594  T
Q  218 catttaaaattt 229  Q
    | ||||||||||    
T  6595 cttttaaaattt 6606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 1215019 - 1215111
Alignment:
Q  134 tgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaa 226  Q
    ||||||||| || ||||||||| |||||| ||| ||||||||||||||  ||||| |||||| |||| |||  ||||||||||||| ||||||    
T  1215019 tgtttagtccctgcaaatagggctcatttaaaacatggtctctgtattgcttaatcctgacattttgccctgtcaaaatttaatcacttaaaa 1215111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 13378550 - 13378629
Alignment:
Q  147 caaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaa 226  Q
    ||||||||| |||||| ||||||||||  |||||| |||||| ||| ||||||| ||||| |||||||||||| ||||||    
T  13378550 caaataggggtcatttaaaaaatggtccttgtatttgttaatcctggcaatttgccctcctaaaatttaatcacttaaaa 13378629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 26463208 - 26463290
Alignment:
Q  151 tagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    ||||| || ||| |||| ||||| |||||||||||||| ||| ||| ||  |||  |||| ||||||||||||||||||||||    
T  26463208 taggggtcgtttaaaaattggtccctgtattcgttaatcctggcaaattacccttgcaaagtttaatcatttaaaatttcgtc 26463290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 22054223 - 22054124
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctc-tgtattcgttaattctgacaatttgtcctcccaaaatttaatcat 220  Q
    ||||||||||| | |||||||| | |||||||||||| ||| | |||||  ||| |||||| |||||| ||| ||||||| |||| ||||||||||||||    
T  22054223 ggcttttatatgtttttagtct-tgcaaatagggatcttttaataaatga-ctcatgtatttgttaatcctggcaatttgccctcgcaaaatttaatcat 22054126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 12187777 - 12187841
Alignment:
Q  165 aaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    ||||||||||||  |||| || ||| ||||| |||| |||||||||| ||||||||| |||||||    
T  12187777 aaaatggtctctacattccttcattatgacattttgccctcccaaaaattaatcattaaaaattt 12187841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 31406913 - 31406989
Alignment:
Q  157 tcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaatttcgtc 233  Q
    |||||| |||| | ||| ||||| |||||||| |||  ||||||||||  ||  |||||||||||||||||||||||    
T  31406913 tcatttaaaaattagtccctgtaatcgttaatcctggtaatttgtccttgcattatttaatcatttaaaatttcgtc 31406989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 31627 - 31728
Alignment:
Q  124 cttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcattta 223  Q
    |||| |||| ||||||||| || |||||||   |||||| || |||||||  ||||||||||||| || |||||||| |||||||||||||||||| |||    
T  31627 ctttaatatgtgtttagtccctacaaatagaagtcatttaaacaatggtca-tgtattcgttaatccttacaatttgccctcccaaaatttaatcactta 31725  T
Q  224 aaa 226  Q
    |||    
T  31726 aaa 31728  T

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Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 31023 - 31124
Alignment:
Q  125 ttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaa 224  Q
    |||||||| |||||| || || |||||| |  |||||| |||||||||   ||||||| ||||||||| |||||||||||  ||||||||||||| ||||    
T  31023 ttttatatgtgtttaatccctgcaaatatgagtcatttaaaaaatggttcatgtattccttaattctggcaatttgtcctgtcaaaatttaatcacttaa 31122  T
Q  225 aa 226  Q
    ||    
T  31123 aa 31124  T

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Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 14176 - 14111
Alignment:
Q  164 aaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatttaaaattt 229  Q
    |||||| |||||| ||||| ||||| |||| | |||| ||||||||||||||||||||||||||||    
T  14176 aaaaatagtctctctattccttaatcctgatattttgccctcccaaaatttaatcatttaaaattt 14111  T

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Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 23231 - 23338
Alignment:
Q  122 ggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatcatt 221  Q
    |||||| |||| ||||| ||| || |||||| |  |||||| |||| |||||| |||||| |||||| ||| |||| | |||| ||||| ||||||||||    
T  23231 ggctttgatatgtgtttcgtccctgcaaatatgagtcatttaaaaattggtctatgtatttgttaatcctgtcaatctatccttccaaagtttaatcatt 23330  T
Q  222 taaaattt 229  Q
    ||||||||    
T  23331 taaaattt 23338  T

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Target: scaffold0117 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 15878 - 15766
Alignment:
Q  120 ttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatca 219  Q
    |||||||||||||  |||||||| || ||||||||| ||||||  ||||| ||  |||||||| ||||| | | || |||  ||| ||||||||||||||    
T  15878 ttggcttttatat--gtttagtccctgcaaataggggtcatttagaaaattgttcctgtattctttaatccaggcatttttccctgccaaaatttaatca 15781  T
Q  220 -tttaaaatttcgtc 233  Q
     ||||||||||||||    
T  15780 ttttaaaatttcgtc 15766  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 239981 - 239868
Alignment:
Q  120 ttggcttttatatctgtttagtctctccaaatagggatcattttaaaaatggtctctgtattcgttaattctgacaatttgtcctcccaaaatttaatca 219  Q
    ||||||||||||| ||||| |||  | ||  ||||| |||||| |||| ||||  ||||| ||| |||| ||| ||| ||  ||| ||||| ||||||||    
T  239981 ttggcttttatatgtgtttcgtccttgcacttaggggtcatttaaaaattggttcctgtaatcgataatcctggcaaattacccttccaaagtttaatca 239882  T
Q  220 tttaaaatttcgtc 233  Q
    ||||||||||||||    
T  239881 tttaaaatttcgtc 239868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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