View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_38 (Length: 220)
Name: NF17878_low_38
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_38 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 47889 - 48079
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47889 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
47988 |
T |
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| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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| T |
47989 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
48079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 60428 - 60618
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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| T |
60428 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
60527 |
T |
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| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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| T |
60528 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
60618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 72547 - 72737
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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| T |
72547 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
72646 |
T |
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| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72647 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
72737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 18691238 - 18691428
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18691238 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
18691337 |
T |
|
| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691338 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
18691428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 15698977 - 15699167
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15698977 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15699076 |
T |
|
| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699077 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
15699167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 15711516 - 15711706
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15711516 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15711615 |
T |
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| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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| T |
15711616 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
15711706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 15723994 - 15724184
Alignment:
| Q |
14 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
113 |
Q |
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||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15723994 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15724093 |
T |
|
| Q |
114 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
204 |
Q |
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| T |
15724094 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaatt |
15724184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
40 |
cataattgatggtattgatattaactatgagta |
72 |
Q |
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| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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