View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_4 (Length: 499)
Name: NF17878_low_4
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 41104697 - 41104762
Alignment:
| Q |
67 |
tttgttacgagtcgggaatccttcccttgcaattgaatagactaatcattatatttgaaccaaatagtatt |
137 |
Q |
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| T |
41104697 |
tttgttacgattcgggaatccttcccttgcaattgaatagactaatc-----atttgaaccaaatagtatt |
41104762 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41104449 - 41104509
Alignment:
| Q |
1 |
tggcatacccataattcttctcaccgccatttcattcatataaactattaactgtccagtaaaata |
66 |
Q |
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| T |
41104449 |
tggcatacccataattcttctcaccgc-----cattcatataaactattaactatccagtaaaata |
41104509 |
T |
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