View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17878_low_6 (Length: 425)
Name: NF17878_low_6
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 26008053 - 26008448
Alignment:
| Q |
20 |
tctttgttgtagtgtgtgtctcaagtctcaacnnnnnnnctagcaaaaagaaagagaagattgagagtaaatggtgatttggattctctccatttccaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26008053 |
tctttgttgtagtgtgtgtctcaagtctcaacaaaaaaactagcaaaaagaaagagaagattgagagtaaatggtgacttggattctctccatttccaca |
26008152 |
T |
|
| Q |
120 |
cccacaaatgcaccaagagaggtgatacttccaatgcattgtaacattaaccaataaaaatgaaacaaggactacatctatttttcaacacttcaaacaa |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26008153 |
cccagaaatgcaccaagagaggtgatacttccaatgcattgtaacattaaccaataaaaatgaaacaaggactacatctacttttcaacacttcaaacaa |
26008252 |
T |
|
| Q |
220 |
aatcttgaaaaatcttgcctaagtgaaacttgccattgttacattcaatagcatttacaacctcttgaaatgtggaaacactacatggaactaccaagcc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26008253 |
aatcttgaaaaatcttgcctaagtgaaacttgccattgttacattcaatagcatttacaacctcttgaaatgttgaaacactacatggaactaccaagcc |
26008352 |
T |
|
| Q |
320 |
attcctctgctcaaatccaaactcattgtatgacttctccaacaacatcttgaataaagggtgagaaagatagcttgttggaaccacatgtctctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26008353 |
attcctctgctcaaatccaaactcattgtatgacttctccaacaacatcttgaataaagggtgagaaagatagcttgttggaaccacatgtctctg |
26008448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 42552120 - 42551989
Alignment:
| Q |
245 |
aaacttgccattgttacattcaatagcatttacaacctcttgaaatgtggaaacactacatggaactaccaagccattcctctgctcaaatccaaactca |
344 |
Q |
| |
|
|||||| | |||||||||||| |||||||| || || || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
42552120 |
aaacttacaattgttacattctatagcattaaccacttcatgaaatgctgaaacactacatggaactaccaagccattcctctgttcaaatccaaattca |
42552021 |
T |
|
| Q |
345 |
ttgtatgacttctccaacaacatcttgaataa |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
42552020 |
ttgtatgctttctccaacaacatcttgaataa |
42551989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 245 - 408
Target Start/End: Complemental strand, 42547866 - 42547703
Alignment:
| Q |
245 |
aaacttgccattgttacattcaatagcatttacaacctcttgaaatgtggaaacactacatggaactaccaagccattcctctgctcaaatccaaactca |
344 |
Q |
| |
|
|||||| | ||| |||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| ||| |
|
|
| T |
42547866 |
aaacttacaattattacattctatagccttaacaacctcttgaaatgctgaaacactacatggaactaccaagccattcttctgttcaaacccaaattca |
42547767 |
T |
|
| Q |
345 |
ttgtatgacttctccaacaacatcttgaataaagggtgagaaagatagcttgttggaaccacat |
408 |
Q |
| |
|
||||||| |||||||||||||| |||||||| || || || || || || ||||||||||||| |
|
|
| T |
42547766 |
ttgtatgctttctccaacaacattttgaataatggatgtgagaggtacctggttggaaccacat |
42547703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University