View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_8 (Length: 409)
Name: NF17878_low_8
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 54471424 - 54471046
Alignment:
| Q |
16 |
atagatacacccagaagaaaacgtgtttcttttccaactcacctctcctacaagcaactatttctctatttttaacatgctatatgcttttttctatctg |
115 |
Q |
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| T |
54471424 |
atagatacacccagaagaaaacgtgtttcttttccaactcacctctcctacaagcaactatttctctatttttaacatgctatatgcttttttctatctg |
54471325 |
T |
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| Q |
116 |
tcacttactaattttatactgtaggtagttataaactctttgttgagtgctaaacaaaatttaatcttaatcaaaacattggtcatcacgtgtgttgtgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54471324 |
tcacttactaattttatactgtaggtagttataaactctttgttgagtgctaaacaaaatttaatcttaatcaaaacattggtcatcacgtgtgttgtgc |
54471225 |
T |
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| Q |
216 |
tctgtctgtttgttattacaaccaaatatgactccttagtgtttgcaaactggttcgaaatgtctcgtctcgcatcgatgtattttcatgatggcgctga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
54471224 |
tctgtctgtttgttattacaaccaaatatgactccttagtgtttgcaaactggttcgaaatgtctcgcat--catcgatgtattttcatgatggcgctga |
54471127 |
T |
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| Q |
316 |
aactaaaaatgaaataaaactagccaattgttgcttagtatagaaggacaaaattaaaagtggggggaataagccaacttcatttc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
54471126 |
aactaaaaatgaaataaaactagccaattgttgcttagttaaaaaggaca-----aaaagtggggggaataagccaacttcatttc |
54471046 |
T |
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