View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17878_low_9 (Length: 390)
Name: NF17878_low_9
Description: NF17878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17878_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 28310023 - 28310398
Alignment:
| Q |
1 |
ttcattctttgcaagtatcttcatgtctcatggcctcaaaagcgacctcggtgcaccaaacatttacaagaccaggaccagctgcctttgggctgatatg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28310023 |
ttcattctttgcaagtatcttcatgtcttatggcctcaaaagcgacctcggtgcaccaaacatttacaagaccaggaccagctgcctttgggttgatatg |
28310122 |
T |
|
| Q |
101 |
atactttggatttataatgttgtatgtggcttgtgttccctcttcattgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttg |
200 |
Q |
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| T |
28310123 |
atactttgggtttataatgttgtatgtggcttgtgccacctcttcactgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttg |
28310222 |
T |
|
| Q |
201 |
cttttcatgttaatttgtaggttcatgaaacaaaaataaaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28310223 |
cttttcatgttaatttgtaggttcatgaaacaaaaattaaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaacta |
28310322 |
T |
|
| Q |
301 |
gatatattttagtgttttatctcatattacttaattttaatttttgttgaagacaatatttaccttatgttcatct |
376 |
Q |
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| T |
28310323 |
gatatattttagtattttatctcatattacttaattttaatttctgttgaagacaatatttaccttacgttcatct |
28310398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 139 - 374
Target Start/End: Original strand, 28305176 - 28305409
Alignment:
| Q |
139 |
cctcttcattgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
238 |
Q |
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| T |
28305176 |
cctcttctatgtcttttcattgttggtgtatgatgattgttagagcataa--gttgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
28305273 |
T |
|
| Q |
239 |
aaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaatttt |
338 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
28305274 |
aaagtaatatgtctagtactttagttagttttctaagaaagagattgtactcaaattaactttaactattttagtgttttatctcatattacttaatttt |
28305373 |
T |
|
| Q |
339 |
aatttttgttgaagacaatatttaccttatgttcat |
374 |
Q |
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||||| |||| ||||||||||||||||||||||||| |
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| T |
28305374 |
aatttatgttaaagacaatatttaccttatgttcat |
28305409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 265 - 376
Target Start/End: Complemental strand, 19796109 - 19796000
Alignment:
| Q |
265 |
ggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaattttaatttttgttgaagacaatatttacc |
364 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
19796109 |
ggatttctaagaaagagattgtactcaaattaacttgatcg-ttttagtgttttatctcatattacttaattttaatttctgtt-aagacaatatttacc |
19796012 |
T |
|
| Q |
365 |
ttatgttcatct |
376 |
Q |
| |
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|||||||||||| |
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|
| T |
19796011 |
ttatgttcatct |
19796000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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