View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17879_high_2 (Length: 411)
Name: NF17879_high_2
Description: NF17879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17879_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 90 - 396
Target Start/End: Complemental strand, 26326172 - 26325866
Alignment:
| Q |
90 |
ctggttttcttgtagtgattaattttggacatatatatgattaaaaactaaccattagagtgaataattcgtctaagaacttgactaccactggaagaat |
189 |
Q |
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| T |
26326172 |
ctggttttcttgtagtgattaattttggacatatatatgattaaaaactaaccattagagtgaataattcgtctaagaacttgactaccactggaagaat |
26326073 |
T |
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| Q |
190 |
tttgttgttgttctggtggccattgattaagtgccaacgcttcggtctgttgttgattctcattcgttcgtgatgaactacccgcttcaaagttattcat |
289 |
Q |
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| T |
26326072 |
tttgttgttgttctggtggccattgatcaagtgccaacgcttcagtctgttgttgattctcattcgttcgtgatgaactacccgcttcaaagttattcat |
26325973 |
T |
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| Q |
290 |
tccaaatgaaacattattatttggctgaccaagttgattttgaaccattggaagagaaaatgtttcattagtagtaccatgttcatgttgaataccagga |
389 |
Q |
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| T |
26325972 |
tccaaatgaaacattattatttggctgaccaagttgattttgaaccattggaagagaaaatgtttcattagtagtaccatgtccatgttgaataccagga |
26325873 |
T |
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| Q |
390 |
tgatttt |
396 |
Q |
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||||||| |
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| T |
26325872 |
tgatttt |
26325866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26326261 - 26326229
Alignment:
| Q |
1 |
caactccaagcttccatgaatctcaagattttc |
33 |
Q |
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| T |
26326261 |
caactccaagcttccatgaatctcaagattttc |
26326229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 48320064 - 48320120
Alignment:
| Q |
323 |
ttgattttgaaccattggaagagaaaatgtttcattagtagtaccatgttcatgttg |
379 |
Q |
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| T |
48320064 |
ttgatcttgaaccattggaacagaaaatgtttcatttgtactaccatttccatgttg |
48320120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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