View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17879_low_1 (Length: 424)

Name: NF17879_low_1
Description: NF17879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17879_low_1
NF17879_low_1
[»] chr3 (41 HSPs)
chr3 (11-410)||(7607000-7607399)
chr3 (11-224)||(11169897-11170108)
chr3 (11-224)||(457702-457914)
chr3 (11-224)||(5899210-5899420)
chr3 (11-224)||(10956600-10956811)
chr3 (11-224)||(6064043-6064255)
chr3 (13-224)||(3306271-3306479)
chr3 (11-148)||(4308855-4308992)
chr3 (13-162)||(42991762-42991911)
chr3 (11-168)||(43227838-43227995)
chr3 (11-189)||(35918523-35918701)
chr3 (13-179)||(43422010-43422172)
chr3 (11-188)||(18097459-18097634)
chr3 (13-188)||(28100637-28100810)
chr3 (13-188)||(28137870-28138043)
chr3 (90-224)||(53916286-53916418)
chr3 (13-168)||(890347-890499)
chr3 (80-224)||(890507-890649)
chr3 (63-204)||(53916450-53916589)
chr3 (81-189)||(23636419-23636527)
chr3 (63-204)||(43422247-43422386)
chr3 (13-130)||(53916124-53916239)
chr3 (88-168)||(890705-890785)
chr3 (28-188)||(1619263-1619422)
chr3 (88-210)||(3316019-3316141)
chr3 (24-79)||(23636620-23636675)
chr3 (63-204)||(11169726-11169865)
chr3 (63-152)||(5899090-5899178)
chr3 (63-189)||(6064287-6064412)
chr3 (63-189)||(457546-457670)
chr3 (80-190)||(4309020-4309131)
chr3 (63-148)||(10956843-10956926)
chr3 (80-189)||(42991638-42991748)
chr3 (80-148)||(18097622-18097691)
chr3 (80-220)||(35918688-35918828)
chr3 (33-129)||(2075639-2075734)
chr3 (80-141)||(28138031-28138093)
chr3 (80-189)||(43227720-43227830)
chr3 (13-51)||(25635042-25635080)
chr3 (80-189)||(28100798-28100908)
chr3 (58-187)||(43402814-43402940)
[»] chr1 (44 HSPs)
chr1 (11-224)||(20301948-20302161)
chr1 (11-224)||(51751854-51752067)
chr1 (11-224)||(16227987-16228199)
chr1 (11-224)||(47179179-47179391)
chr1 (11-189)||(28842018-28842196)
chr1 (25-189)||(27337585-27337748)
chr1 (13-188)||(31736157-31736332)
chr1 (58-222)||(16430484-16430645)
chr1 (24-167)||(14098565-14098706)
chr1 (80-224)||(50077395-50077538)
chr1 (80-204)||(31423638-31423761)
chr1 (63-189)||(51751698-51751822)
chr1 (58-224)||(8954034-8954197)
chr1 (80-189)||(13126198-13126306)
chr1 (80-221)||(16430295-16430435)
chr1 (80-179)||(25249254-25249353)
chr1 (81-204)||(50077586-50077709)
chr1 (63-204)||(16227813-16227955)
chr1 (80-204)||(6996891-6997015)
chr1 (24-130)||(28202002-28202106)
chr1 (13-113)||(8347873-8347970)
chr1 (13-79)||(8954269-8954335)
chr1 (29-188)||(13126055-13126210)
chr1 (13-168)||(50077235-50077387)
chr1 (13-167)||(25249093-25249245)
chr1 (80-204)||(20301777-20301901)
chr1 (13-188)||(31423478-31423650)
chr1 (80-168)||(28202152-28202240)
chr1 (63-189)||(47179023-47179147)
chr1 (13-130)||(25127438-25127553)
chr1 (82-204)||(31423829-31423951)
chr1 (13-168)||(155234-155385)
chr1 (22-75)||(16430721-16430774)
chr1 (80-167)||(25127207-25127295)
chr1 (88-204)||(25249451-25249567)
chr1 (80-189)||(31736320-31736430)
chr1 (100-188)||(25127283-25127371)
chr1 (13-78)||(6997107-6997172)
chr1 (80-204)||(14098715-14098840)
chr1 (83-152)||(10742240-10742308)
chr1 (137-178)||(28997281-28997322)
chr1 (137-178)||(29002997-29003038)
chr1 (100-189)||(13548115-13548203)
chr1 (33-78)||(28221514-28221559)
[»] chr8 (15 HSPs)
chr8 (11-224)||(27828843-27829056)
chr8 (11-224)||(18812420-18812631)
chr8 (11-224)||(43081473-43081685)
chr8 (28-224)||(41384242-41384435)
chr8 (35-188)||(15072289-15072440)
chr8 (63-187)||(27828687-27828811)
chr8 (80-203)||(15072177-15072301)
chr8 (34-189)||(17849316-17849468)
chr8 (63-204)||(41384071-41384210)
chr8 (14-125)||(31574293-31574401)
chr8 (13-79)||(21482015-21482081)
chr8 (66-148)||(43081358-43081438)
chr8 (117-167)||(14418788-14418838)
chr8 (13-78)||(18959981-18960046)
chr8 (37-187)||(42435993-42436141)
[»] chr7 (38 HSPs)
chr7 (11-224)||(1047540-1047751)
chr7 (11-224)||(7349903-7350115)
chr7 (11-224)||(22136629-22136841)
chr7 (11-224)||(40551656-40551868)
chr7 (11-224)||(44065-44277)
chr7 (11-224)||(31156536-31156747)
chr7 (11-188)||(7092804-7092981)
chr7 (25-188)||(28487032-28487195)
chr7 (13-168)||(21679565-21679718)
chr7 (24-188)||(38395768-38395932)
chr7 (80-224)||(9680200-9680342)
chr7 (13-188)||(7470663-7470837)
chr7 (13-188)||(9680330-9680503)
chr7 (13-130)||(20298998-20299113)
chr7 (13-188)||(24815665-24815835)
chr7 (80-188)||(20298844-20298952)
chr7 (80-204)||(44726293-44726417)
chr7 (58-168)||(24815803-24815910)
chr7 (63-189)||(43909-44033)
chr7 (63-189)||(1047783-1047907)
chr7 (13-113)||(44726480-44726577)
chr7 (58-187)||(4509627-4509753)
chr7 (58-187)||(4511469-4511595)
chr7 (80-189)||(20298649-20298759)
chr7 (80-189)||(21679447-21679557)
chr7 (63-148)||(22136514-22136597)
chr7 (63-148)||(40551541-40551624)
chr7 (80-148)||(20298787-20298856)
chr7 (80-203)||(7470825-7470949)
chr7 (80-210)||(7092969-7093100)
chr7 (63-146)||(7350147-7350228)
chr7 (63-189)||(31156779-31156904)
chr7 (33-189)||(6067777-6067931)
chr7 (34-141)||(26214491-26214595)
chr7 (63-168)||(9680065-9680168)
chr7 (80-148)||(38395711-38395780)
chr7 (80-141)||(28486982-28487044)
chr7 (34-180)||(6048210-6048354)
[»] chr4 (40 HSPs)
chr4 (11-224)||(22044967-22045178)
chr4 (13-204)||(22133026-22133215)
chr4 (14-224)||(22780989-22781199)
chr4 (11-224)||(16932397-16932608)
chr4 (11-224)||(9174721-9174933)
chr4 (11-224)||(11006818-11007030)
chr4 (13-188)||(12401386-12401559)
chr4 (13-188)||(12396444-12396617)
chr4 (24-188)||(3825167-3825331)
chr4 (58-224)||(36379816-36379979)
chr4 (11-130)||(22801400-22801517)
chr4 (83-224)||(5100406-5100538)
chr4 (22-167)||(16454857-16454999)
chr4 (13-130)||(47564344-47564459)
chr4 (88-203)||(36920332-36920447)
chr4 (13-130)||(5100586-5100701)
chr4 (14-130)||(36920165-36920279)
chr4 (80-189)||(47564189-47564298)
chr4 (13-130)||(14788063-14788178)
chr4 (63-204)||(16932640-16932782)
chr4 (13-111)||(36380023-36380119)
chr4 (63-189)||(11007062-11007187)
chr4 (80-204)||(14788224-14788348)
chr4 (22-152)||(18535387-18535512)
chr4 (80-168)||(24879965-24880053)
chr4 (63-189)||(9174965-9175089)
chr4 (63-148)||(22045210-22045293)
chr4 (63-204)||(36379644-36379783)
chr4 (80-204)||(16454723-16454848)
chr4 (80-189)||(22801563-22801672)
chr4 (80-136)||(18535536-18535592)
chr4 (63-189)||(22781231-22781356)
chr4 (24-130)||(24880099-24880203)
chr4 (80-165)||(3825319-3825405)
chr4 (79-152)||(18535627-18535700)
chr4 (86-189)||(3577451-3577556)
chr4 (58-186)||(3577620-3577748)
chr4 (80-148)||(12396605-12396674)
chr4 (80-148)||(12401547-12401616)
chr4 (134-189)||(10114273-10114328)
[»] chr2 (19 HSPs)
chr2 (11-224)||(19502587-19502798)
chr2 (11-224)||(35216220-35216432)
chr2 (11-224)||(36559395-36559607)
chr2 (24-168)||(21518998-21519140)
chr2 (80-204)||(6259559-6259682)
chr2 (60-222)||(31733465-31733624)
chr2 (13-189)||(13828881-13829053)
chr2 (80-189)||(22405145-22405254)
chr2 (63-189)||(35216464-35216588)
chr2 (28-188)||(6259413-6259571)
chr2 (73-168)||(31733666-31733761)
chr2 (63-148)||(36559639-36559722)
chr2 (80-204)||(21519148-21519273)
chr2 (24-76)||(31733336-31733388)
chr2 (63-189)||(19502830-19502954)
chr2 (80-140)||(6259748-6259808)
chr2 (33-152)||(30262377-30262495)
chr2 (34-168)||(28568828-28568961)
chr2 (33-70)||(41303707-41303744)
[»] chr5 (29 HSPs)
chr5 (25-224)||(27911967-27912165)
chr5 (11-224)||(34477669-34477881)
chr5 (11-224)||(10756710-10756923)
chr5 (11-224)||(15355102-15355315)
chr5 (11-224)||(23666859-23667072)
chr5 (11-224)||(31544550-31544761)
chr5 (13-224)||(18509949-18510157)
chr5 (11-168)||(6746850-6747007)
chr5 (25-224)||(41586557-41586752)
chr5 (24-188)||(659496-659658)
chr5 (13-148)||(18468521-18468656)
chr5 (31-168)||(31466558-31466693)
chr5 (80-204)||(20504657-20504781)
chr5 (63-210)||(27911790-27911935)
chr5 (80-204)||(41586798-41586922)
chr5 (63-189)||(18510189-18510314)
chr5 (81-204)||(20044335-20044459)
chr5 (80-204)||(659383-659508)
chr5 (80-168)||(20044468-20044556)
chr5 (23-74)||(20044655-20044706)
chr5 (63-148)||(10756595-10756678)
chr5 (63-148)||(15355347-15355430)
chr5 (24-113)||(20504507-20504594)
chr5 (63-148)||(23666744-23666827)
chr5 (81-148)||(6746773-6746841)
chr5 (66-189)||(31544394-31544515)
chr5 (63-189)||(34477913-34478038)
chr5 (80-148)||(31466701-31466770)
chr5 (81-190)||(18468382-18468492)
[»] chr6 (13 HSPs)
chr6 (11-224)||(33310705-33310917)
chr6 (11-224)||(26066648-26066860)
chr6 (16-224)||(3395847-3396053)
chr6 (13-224)||(3630461-3630668)
chr6 (24-161)||(30729401-30729536)
chr6 (28-162)||(15533279-15533411)
chr6 (22-189)||(26944711-26944876)
chr6 (80-189)||(3630715-3630824)
chr6 (63-204)||(3395676-3395815)
chr6 (80-204)||(15533425-15533550)
chr6 (63-148)||(26066892-26066975)
chr6 (63-148)||(33310590-33310673)
chr6 (83-189)||(11137784-11137892)
[»] scaffold0140 (2 HSPs)
scaffold0140 (11-224)||(23940-24153)
scaffold0140 (63-148)||(23825-23908)
[»] scaffold0250 (1 HSPs)
scaffold0250 (11-224)||(2391-2592)
[»] scaffold0025 (2 HSPs)
scaffold0025 (11-188)||(69870-70048)
scaffold0025 (80-204)||(70036-70161)
[»] scaffold1674 (2 HSPs)
scaffold1674 (11-188)||(131-308)
scaffold1674 (80-152)||(296-369)
[»] scaffold0011 (2 HSPs)
scaffold0011 (80-210)||(35253-35383)
scaffold0011 (13-130)||(35429-35542)
[»] scaffold0006 (1 HSPs)
scaffold0006 (147-224)||(189200-189278)
[»] scaffold0005 (2 HSPs)
scaffold0005 (13-130)||(51552-51667)
scaffold0005 (80-204)||(51382-51506)
[»] scaffold0133 (3 HSPs)
scaffold0133 (86-162)||(4195-4271)
scaffold0133 (88-161)||(4292-4365)
scaffold0133 (13-143)||(4387-4512)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 7607000 - 7607399
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7607000 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttatacctcttaacctcttcagccatcagaatgtcttcc 7607099  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  7607100 gccttctcgaagatccttgtagtccaactacgccaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 7607199  T
Q  211 cttgaagatctactgatccaccagctcttctctcttattcttcatgctcccaaacttttgatggccctaagaatgaaggcactccatagttttagaaagg 310  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607200 cttgaagatctactaattcaccagctcttctctcttattcttcatgctcccaaacttttgatggccctaagaatgaaggcactccatagttttagaaagg 7607299  T
Q  311 tttatgacactatccccattatggctagcccaagcctgcctaaatatatcaatactgtttttatcatgcatccccaaacttgctcaaaccacttgatctt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607300 tttatgacactatccccattatggctagcccaagcctgcctaaatatatcaatactgtttttatcatgcatccccaaacttgctcaaaccacttgatctt 7607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 11170108 - 11169897
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  11170108 atcatcaacctccttgctgctctttcccttgcttcccactactctaagtagctccacaagtttacacctc--aacctcttcagccatcggaatgtcttcc 11170011  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    ||||||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||  || |    
T  11170010 gccttcatgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaataccagacatctcccgctttc 11169911  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  11169910 cttgaagatctact 11169897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 457914 - 457702
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||    
T  457914 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacac-tctcaacctcttcagcgatcggaatgtcttcc 457816  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  457815 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 457716  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  457715 cttgaagatctact 457702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 5899420 - 5899210
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||    
T  5899420 atcattaacctccttgctgctatttcccttgcttcccactactccaagtaactccacaagtttacaccc--taacctcttcagccatcagaatgtcttcc 5899323  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||  || |    
T  5899322 gccttctcgaagatgcttgtagtccaactatgctaggaatttcagatagttctacaagactataccataccctcttcaattcgagatatctcccgctt-c 5899224  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  5899223 cttgaagatctact 5899210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 10956600 - 10956811
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||   || |||||||||||||  |||||||||||    
T  10956600 atcatcaacctccttgctgctctttccattgcttcccactacaccatgtagctccacaagtttacaccc--tagcctcttcagccattggaatgtcttcc 10956697  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  10956698 gccttctcgaagatgcttgtagtccaactacgctacgaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 10956797  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  10956798 cttgaagatctact 10956811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 6064043 - 6064255
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| ||||||    
T  6064043 atcagcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatatcttcc 6064141  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   || |    
T  6064142 gccttctcgaagatgcttgtagtccaactacactaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcctgctttc 6064241  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  6064242 cttgaagatctact 6064255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 3306479 - 3306271
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||   |||||||||||| |||| |||||||||||||    
T  3306479 catcaaccaccttgctgctctttcccttgcttcccactacacctagttgctccacaagtttacaccc--taacctcttcagtcatcggaatgtcttccgc 3306382  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttccct 212  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |||    
T  3306381 cttctcgaagatgcttgtagtccaactactctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctt-cct 3306283  T
Q  213 tgaagatctact 224  Q
    ||||||||||||    
T  3306282 tgaagatctact 3306271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 4308855 - 4308992
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  4308855 atcatcaaccttcttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacctcataaccccttcagccctcagaatgtcttcc 4308954  T
Q  111 gccttctcgaagatccttgtagtccaactacgctagga 148  Q
    |||||||||||| |||||| ||||||||||| ||||||    
T  4308955 gccttctcgaaggtccttgcagtccaactacactagga 4308992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 42991911 - 42991762
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||  ||||||||||||    
T  42991911 catcaaccaccatgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacctcttaaccccttcagccctcgaaatgtcttccgc 42991812  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    |||||||||| |||||||||||||||||| |||||||||| || ||||||    
T  42991811 cttctcgaaggtccttgtagtccaactacactaggaattttaggtagttc 42991762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 43227995 - 43227838
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||| || |||||||||||    
T  43227995 atcatcaaccaccttgctgctctttcccttgcttcccactactccaagtatctccacaagtttacacctcatgaccccttcagccctcggaatgtcttcc 43227896  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    |||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||    
T  43227895 gccttctcgaaggtccttgcagtccaactacactaggaattttagttagttccacaag 43227838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 35918523 - 35918701
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||||||    
T  35918523 atcatcaaccttcttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacccattcagccctcggaatgtcttcc 35918622  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    |||||||||||  |||||| ||||||||||| |||||| ||| || |||| | |||||  |  ||| ||||||||||||    
T  35918623 gccttctcgaaagtccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccttaacctcttcaa 35918701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 43422010 - 43422172
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| |||||||||||||||||||  |||||||||| |||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  43422010 catcaaccaccttgctgctctttccctta-ttcccactacaccaagtagttccacaaatttacac-tct-aacctcttcagccatcagaatgtcttccgc 43422106  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  43422107 cttctcgaagatccttgt-gtccaactacactaggaatttcaggtagttctacaagactgtaccata 43422172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 18097459 - 18097634
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||| ||||||||||| |||||||||||    
T  18097459 atcatcaaccaccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacctcc--accccttcagccatcggaatgtcttcc 18097556  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
     ||||||||||| |||||| |||||||||| ||||||||||| || |||||| |||||  |  ||| |||||||||||    
T  18097557 accttctcgaaggtccttgcagtccaactaggctaggaattttaggtagttccacaagcattcaccttaacctcttca 18097634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 28100637 - 28100810
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  28100637 catcaaccaccatgctgctctttgccttgcttcccactacaccaagtagctccacaagtttacacct--taaccccttcagccatcggaatgtcttccgc 28100734  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||| |||||| |||||| |||| ||| |||||| || |||||| |||||  |  ||| |||||||||||    
T  28100735 cttctcgaaggtccttgcagtccatctacactatgaattttaggtagttccacaagcattcaccttaacctcttca 28100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 28137870 - 28138043
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| | ||||||||||| ||||||||||| |    
T  28137870 catcaaccaccatgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacct--taatcccttcagccatcggaatgtcttcctc 28137967  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||| ||| |||||| ||||||||||| |||| ||||| || |||||| |||||  |  ||| |||||||||||    
T  28137968 cttctcaaaggtccttgcagtccaactacactagaaattttaggtagttccacaagcattcaccttaacctcttca 28138043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 53916286 - 53916418
Alignment:
Q  90 tcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  53916286 tcagccatcggaatgtcttccgccttctcgaagatccttatagtccaactacgctaggaatttcaggtagttctacaagactataccat-acttcttcaa 53916384  T
Q  190 tacgagacatctcccatttcccttgaagatctact 224  Q
     ||  |||||||||   || |||||||||||||||    
T  53916385 cacaggacatctcctgctt-ccttgaagatctact 53916418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 890347 - 890499
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | ||||||||||| ||||| ||||| |||||||    
T  890347 catcaaccaccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacac--cctaacctcttcaaccatcggaatgccttccgc 890444  T
Q  113 cttctcgaagatccttgtagtcca-actacgctaggaatttcagatagttctacaag 168  Q
    | | | ||||||||||| |||||| ||||| | |||||||| || |||||| |||||    
T  890445 cct-ttgaagatccttg-agtccagactactcaaggaattttaggtagttccacaag 890499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 890507 - 890649
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||| |||||| ||||||||||||||  ||||||| ||||||||||||||||||||||     
T  890507 cttaacctcttcagccatcggaatgccttcccccttctcaaagattcttgtaatccaactacgctagttatttcaggtagttctacaagactataccat- 890605  T
Q  180 acctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    || ||||||| ||  ||||||||||  || |||||||||||||||    
T  890606 acttcttcaacacatgacatctcccgctt-ccttgaagatctact 890649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 53916450 - 53916589
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| |||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||| |||| || ||||||    
T  53916450 tccacaagtatacacct--taaccccttcagccctcagaatgtcttccgccttctcgaaggtccttgcagtctaactacgctaggtattttaggtagttc 53916547  T
Q  163 tacaagactataccataacctcttcaatacgagacatctccc 204  Q
     |||||  |  |||||||||||||||| ||  ||||||||||    
T  53916548 cacaagcattaaccataacctcttcaacacaggacatctccc 53916589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 23636527 - 23636419
Alignment:
Q  81 ttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataa 180  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||| |||||| || ||  |  |||||||    
T  23636527 ttaacctcttcagccatcggaatgtcttccgccttctcgaagatccttgtatcgaaactacgctaggaatttcaggtagttccactagcattcaccataa 23636428  T
Q  181 cctcttcaa 189  Q
    |||||||||    
T  23636427 cctcttcaa 23636419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 43422247 - 43422386
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| |||||||  |||||||||||||||||||||||||  |||||| |||||||||||||||| ||||| || ||||||    
T  43422247 tccacaagtatacacct--taaccccttcagctctcagaatgtcttccgccttctcgaatgtccttgcagtccaactacgctagaaattttaggtagttc 43422344  T
Q  163 tacaagactataccataacctcttcaatacgagacatctccc 204  Q
     |||||  |  |||||||| ||||||| ||  ||||||||||    
T  43422345 cacaagcattcaccataacatcttcaacacaggacatctccc 43422386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 53916124 - 53916239
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||| |||||||||||||  | ||||||||||| ||||| ||||| ||| |||    
T  53916124 catcaaccaccatgctgctctttcccttgcttcccactataccaagtagcttcacaagtttacac--cctaacctcttcaaccatcggaatgcctttcgc 53916221  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | ||||||||||||    
T  53916222 ccttttgaagatccttgt 53916239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 890705 - 890785
Alignment:
Q  88 cttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||| || |||||| |||||    
T  890705 cttcagccatcggaatgtcttccgccttctcgaagatccttgcagtcagactacgctaggaattttaggtagttccacaag 890785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 1619263 - 1619422
Alignment:
Q  28 tgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaag---at 124  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||  ||||||||| ||||| ||||| ||||||||||||| |||   ||    
T  1619263 tgctctttcccttgcttcccactacaccatgtagctccacaagttttcacc-ct--acctcttcaaccatcggaatg-cttccgccttctctaagaccat 1619358  T
Q  125 ccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat-aacctcttca 188  Q
    ||||| | ||||||||  |||||||||| || |||||| ||||| ||| ||||| ||||||||||    
T  1619359 ccttgca-tccaactatactaggaattttaggtagttcgacaagtctacaccataaacctcttca 1619422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 3316141 - 3316019
Alignment:
Q  88 cttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttc 187  Q
    |||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||| |||||| || |||||| |||||  |  |||||||| |||||    
T  3316141 cttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacgctaagaattttaggtagttccacaagcattcaccataacatcttc 3316042  T
Q  188 aatacgagacatctcccatttcc 210  Q
    || |   ||||||||||| ||||    
T  3316041 aacataggacatctcccacttcc 3316019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 23636675 - 23636620
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacct 79  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  23636675 ttgctgctctttcccttgcttcccactacaccaagtagatccacaagtttacacct 23636620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 11169865 - 11169726
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||| ||  |||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||| |    
T  11169865 tccacaagtatacacttc--aacccctttagccatcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggagttttaggtagtcc 11169768  T
Q  163 tacaagactataccataacctcttcaatacgagacatctccc 204  Q
     |||||  |  |||||||| ||||||| || | |||||||||    
T  11169767 cacaagcattcaccataacatcttcaacacaaaacatctccc 11169726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 5899178 - 5899090
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaattt 152  Q
    ||||||||| ||||||| | | || |||||||| || |||| |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  5899178 tccacaagtatacacct-taacccccttcagccctcggaatatcttccgccttctcgaaggtccttgcagtccaactacgctaggaattt 5899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 6064287 - 6064412
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| ||||||||  |||| |||||| |||| |||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| || ||||     
T  6064287 tccacaagtatacacctc--aaccccttcagtcatcggaatgtcttccgccttctcgaagagtccttgcagtccaactacactaggagttttaggtagtc 6064384  T
Q  162 ctacaagactataccataacctcttcaa 189  Q
    | |||||  |  |||||||| |||||||    
T  6064385 ccacaagctttcaccataacatcttcaa 6064412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 457670 - 457546
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  || | ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||| |    
T  457670 tccacaagtatacacctc--aaacacttcagccatcggaatatcttccgccttctcgaaggtccttgcagtccaactacactaggagttttaggtagtcc 457573  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  457572 cacaagctttcaccataacatcttcaa 457546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 4309020 - 4309131
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || |||| | |||||  |  |||||    
T  4309020 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccat 4309119  T
Q  179 aacctcttcaat 190  Q
    ||| ||||||||    
T  4309120 aacatcttcaat 4309131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 10956843 - 10956926
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||| |||||| |||| |||||| ||||||    
T  10956843 tccacaagtatacacctc--aaccccttcagccatcggaatatcttccgccttctcgaaggtccttgcagtctaactacactagga 10956926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 42991748 - 42991638
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || || | | |||||  | ||||||    
T  42991748 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtactcccacaagcatttaccat 42991649  T
Q  179 aacctcttcaa 189  Q
    ||| |||||||    
T  42991648 aacatcttcaa 42991638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 18097622 - 18097691
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  18097622 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactagga 18097691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 35918688 - 35918828
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||| |||||| ||||||||||| |||| | ||| || |||| | ||| |  |  |||||    
T  35918688 cttaacctcttcaaccatcagaacgtcttccgtcttctcgaagagtccttgcagtccaactacactagaagttttaggtagtcccacacgcattcaccat 35918787  T
Q  179 aacctcttcaatacgagacatctcccatttcccttgaagatc 220  Q
    ||| |||||||| |  ||||||||||| || |||||||||||    
T  35918788 aacatcttcaatgcaggacatctcccactt-ccttgaagatc 35918828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 2075639 - 2075734
Alignment:
Q  33 tttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttg 129  Q
    |||||||||||||  ||||| |||||||||||||||||||| |||| |||  |||||||| || ||||||||||||||| | |||  ||||||||||    
T  2075639 tttcccttgcttctaactacaccaagtagctccacaagtttccacc-ctttgcctcttcaaccttcagaatgtcttccgtcctcttaaagatccttg 2075734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 28138031 - 28138093
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaag-atccttgtagtccaactac 141  Q
    ||||||||||||||||||| ||| |||||||| |||||||||| ||||||| |||||||||||    
T  28138031 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagaatccttgcagtccaactac 28138093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 43227830 - 43227720
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||| ||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || |||| | |||||  |  |||||    
T  43227830 cttaacctctttagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccat 43227731  T
Q  179 aacctcttcaa 189  Q
    ||| |||||||    
T  43227730 aacatcttcaa 43227720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 25635080 - 25635042
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccacta 51  Q
    |||||||| || |||||||||||||||||||||||||||    
T  25635080 catcaaccaccatgctgctctttcccttgcttcccacta 25635042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 28100798 - 28100908
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||  ||| || ||||| ||||||||||| |||||  |||||||| || |||||  ||| || |||||| |||||  |  |||||    
T  28100798 cttaacctcttcagccattggaacgttttccgtcttctcgaagagtccttacagtccaacgacactaggtgttttaggtagttccacaagcattcaccat 28100897  T
Q  179 aacctcttcaa 189  Q
    |||||||||||    
T  28100898 aacctcttcaa 28100908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 43402814 - 43402940
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    |||| ||||||||||||||||| |  ||||||| |  | ||| |||| |||||||  ||| |||| |||||| | ||||||||| |||||| ||| || |    
T  43402814 gtagttccacaagtttacaccttt--acctcttgaaacctcataatgccttccgctctcttgaagttccttgca-tccaactacactaggatttttaggt 43402910  T
Q  158 agttctacaagactataccataacctcttc 187  Q
    ||||| ||||| ||| ||||||||||||||    
T  43402911 agttccacaagcctacaccataacctcttc 43402940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 20302161 - 20301948
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20302161 atcatcaacatccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcggaatgtcttcc 20302062  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  20302061 gccttctcgaagatccttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 20301962  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  20301961 cttgaagatctact 20301948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 51752067 - 51751854
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  51752067 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtatctccacaagtttacacctcataaccccttcagccctcagaatgtcttcc 51751968  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  51751967 gccttctcgaaggtccttgtagtccaactacgctagaaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccactttc 51751868  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  51751867 cttgaagatctact 51751854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 16228199 - 16227987
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| ||||||    
T  16228199 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatttcttcc 16228101  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |    
T  16228100 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgttttc 16228001  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  16228000 cttgaagatctact 16227987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 47179391 - 47179179
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||||    
T  47179391 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacttcttcagccatcggaatgtcttcc 47179293  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||  || |    
T  47179292 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataaccttttcaatacgagatatcttccgctttc 47179193  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  47179192 cttgaagatctact 47179179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 28842196 - 28842018
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||| || |||||||||||    
T  28842196 atcatcaacctccttgctgctatttcccttgcttcccactactccaagtagctccacaagttaacacctcatgaccccttcagccctcggaatgtcttcc 28842097  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    |||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||  || |||||||| |||||||    
T  28842096 gccttctcgaaggtccttgcagtccaactacactaggaattttaggtagttccacaagcgtacaccataacatcttcaa 28842018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 27337585 - 27337748
Alignment:
Q  25 tgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagat 124  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |    
T  27337585 tgctgctctttcccttg-ttcccactacaccaagtagctccacaagtttacacctcttaacctcttcagccctcggaatgtcttccgccttctcgaaggt 27337683  T
Q  125 ccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    ||||| ||||||||||| |||||| ||| || |||| |||||||  |  |||||||| |||||||    
T  27337684 ccttgcagtccaactacactaggagttttaggtagtcctacaagcattcaccataacatcttcaa 27337748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 31736157 - 31736332
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||    
T  31736157 catcaaccaccatgctgctctttcccttgcttcccattacaccaagtagctccacaagtttacacctcataaccccttcagccctcggaatgtcttccgc 31736256  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||| |||||| |||||||||||| ||||||||| || |||| | |||||  |  ||| |||||||||||    
T  31736257 cttctcgaaggtccttgcagtccaactacgttaggaattttaggtagtcccacaagcattcaccttaacctcttca 31736332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 16430645 - 16430484
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    ||||||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  | || ||| ||||||||||||| |    
T  16430645 gtagctccacaagtacacacct--taacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtatccaaattacactaggaatttcaggt 16430548  T
Q  158 agttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatcta 222  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||| | | |||||||||||||    
T  16430547 agttctacaagactataccataacctctttaatacggaacatctccc-tcttccttgaagatcta 16430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 14098565 - 14098706
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||   ||||| ||||||||||| |||||||||||||||||||||||     
T  14098565 ttgctgctctttcacttgcttcccactacaccaagtagctccacaagtttacaccc--taaccccttcagccatcggaatgtcttccgccttctcgaagg 14098662  T
Q  124 tccttgtagtccaactacgctaggaatttcagatagttctacaa 167  Q
    |||||| ||||||||||| |||||||||| || |||||||||||    
T  14098663 tccttgcagtccaactacactaggaattttaggtagttctacaa 14098706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 50077395 - 50077538
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||| |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  50077395 cttaacctctttagccatcgaaatgtcttccgtcttctcgaagatccttgtagtccaactacgctaggaattttaggtagttctacaagactataccata 50077494  T
Q  180 acctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    ||||||| |||||  ||||||||||  || |||||||||||||||    
T  50077495 acctcttaaatacaggacatctcccgctt-ccttgaagatctact 50077538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 31423638 - 31423761
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||     
T  31423638 cttaacctcttcagccatcggaatgtcttccacattctcgaagatccttgtagtccaactacgctaggaattttaggtagttctacaagactataccat- 31423736  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| || |||||||||||    
T  31423737 acttcttcaacacaagacatctccc 31423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 51751822 - 51751698
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    |||| |||| ||||||||  |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  51751822 tccataagtatacacctc--aaccccttcagccatcggaatgtcttccgccttctcgaaggtccttgtagtccaactacgctaggaatttcaggtagttc 51751725  T
Q  163 tacaagactataccataacctcttcaa 189  Q
    ||||||  |  |||||||| |||||||    
T  51751724 tacaagcattcaccataacatcttcaa 51751698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 8954197 - 8954034
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    ||||||||||||||  ||||||  |||||||||||| ||||  |||||||||| ||||||| || |||||||||  | ||||||  |||||||||||  |    
T  8954197 gtagctccacaagtacacacct--taacctcttcagtcatcgaaatgtcttccaccttctcaaaaatccttgtatccaaactacaataggaatttcacgt 8954100  T
Q  158 agttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    |||||||||||||||||||||||||||||||||||   |||||||||  || |||||||||||||||    
T  8954099 agttctacaagactataccataacctcttcaatacagaacatctcccgctt-ccttgaagatctact 8954034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 13126198 - 13126306
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||| |||||| || |||||| ||||| ||| ||||||    
T  13126198 cttaacctcttcagccatcagaatgtcttccgccttgtcgaagatccttgca-tccaactacactaagaattttaggtagttccacaagtctacaccata 13126296  T
Q  180 acctcttcaa 189  Q
    ||||||||||    
T  13126297 acctcttcaa 13126306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 16430435 - 16430295
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| || |||||| |||||  |  ||||||    
T  16430435 cttaaccccttcagccatcagaatgtgttccgccttctcgaaggtccttgcagtctaactacgctaggaattttaggtagttccacaagcattcaccata 16430336  T
Q  180 acctcttcaatacgagacatctcccatttcccttgaagatct 221  Q
    |||||||||| ||  ||||||||||  || ||||||||||||    
T  16430335 acctcttcaacacaggacatctcccgctt-ccttgaagatct 16430295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 25249254 - 25249353
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||||||||||  | |||||| ||||||||||||| |||||||||||||||||| ||||    
T  25249254 cttaacctcttcagccatcggaatgtcttccgtcttcttgaagatccttgtatccaaactacactaggaatttcaggtagttctacaagactatatcata 25249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 50077586 - 50077709
Alignment:
Q  81 ttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataa 180  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||| || |||||| |||||  |  |||||||    
T  50077586 ttaaccccttcagccctcagaatgtcttccgccttctcgaaggtccttgcaatccaactacgctaggaattttaggtagttccacaagcattcaccataa 50077685  T
Q  181 cctcttcaatacgagacatctccc 204  Q
    | ||||||| ||| ||||||||||    
T  50077686 catcttcaacacgggacatctccc 50077709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 16227955 - 16227813
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| ||| || ||||     
T  16227955 tccacaagtatacacctcataaccacttcagccatcagaatatcttccgccttctcgaagagtccttgtagtccaactacactaggagttttaggtagtc 16227856  T
Q  162 ctacaagactataccataacctcttcaatacgagacatctccc 204  Q
    | |||||  |  |||||||| ||||||| ||  ||||||||||    
T  16227855 ccacaagcattcaccataacatcttcaacacaggacatctccc 16227813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 6997015 - 6996891
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||  | |||||||    
T  6997015 cttaaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggaattttaggtagttccacaagcatttaccata 6996916  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  6996915 acatcttcaacacaggacatctccc 6996891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 28202002 - 28202106
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||  | ||||||||||| ||||||||||| |||||||| | | |||||    
T  28202002 ttgcagctctttcccttgcttcccactacaccaagtagctccacaaggttacac--cctaacctcttcaaccatcagaatgccttccgcccttttgaaga 28202099  T
Q  124 tccttgt 130  Q
    |||||||    
T  28202100 tccttgt 28202106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 8347873 - 8347970
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||    |||||||||| ||||| ||||| |||||||    
T  8347873 catcaaccaccatgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacc---aaacctcttcaaccatcggaatgccttccgc 8347969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 8954335 - 8954269
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacct 79  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8954335 catcaaccaccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacct 8954269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 13126055 - 13126210
Alignment:
Q  29 gctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatcctt 128  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||| ||||    |||||||||| |||||||| |  ||||| |||||| ||||||||||    
T  13126055 gctctttcccttgcttcccattacaccatgtagctccacaagtttccacc---caacctcttcaaccatcagatttccttccaccttcttgaagatcctt 13126151  T
Q  129 gtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    | | | |||||||||||||||||| || ||||||  |||| ||| ||| |||||||||||    
T  13126152 gca-tgcaactacgctaggaattttaggtagttccgcaagtctacaccttaacctcttca 13126210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 50077235 - 50077387
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||  | ||||||||||| |||||  |||| |||||||    
T  50077235 catcaaccaccttgctgctctttccctta-ttcccactacaccaagtagctccacaagtttacac--cctaacctcttcaaccatcgaaatgccttccgc 50077331  T
Q  113 cttctcgaagatccttgtagtcc-aactacgctaggaatttcagatagttctacaag 168  Q
    | | | |||||||||||| |||| |||||| | |||||||| || |||||| |||||    
T  50077332 ccttttgaagatccttgt-gtccaaactactcaaggaattttaggtagttccacaag 50077387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 25249093 - 25249245
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||| ||| ||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||  | |||||||||||  |||||||||| |||||||    
T  25249093 catcgaccaccttgctactcttttccttgcttcccagtacaccaagtagctccacaagtttacac--cctaacctcttcaatcatcagaatgccttccgc 25249190  T
Q  113 cttctcgaagatccttgtagtcc-aactacgctaggaatttcagatagttctacaa 167  Q
    | | | |||||||||||| |||| |||||| | |||||||| || |||||| ||||    
T  25249191 ccttttgaagatccttgt-gtccaaactactcaaggaattttaggtagttccacaa 25249245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 20301901 - 20301777
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| || ||||||||||||||||||||||| |||||| || ||||||||||||||||||| || |||| | |||||  |  ||||||    
T  20301901 cttaaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagcccaactacgctaggaattttagttagtcccacaagcattcaccata 20301802  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || |||||||| | | |||||||||    
T  20301801 acatcttcaatgcaaaacatctccc 20301777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 31423478 - 31423650
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||  ||||||||| | ||||| |||||||||||||    
T  31423478 catcaaccaccatgctgctctttctcttgattct-actacaccaagtagctccacaagtttacacct--taacctctttaaccatcggaatgtcttccgc 31423574  T
Q  113 cttctcgaagatccttgtagtccaa-ctacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    | | | ||||||| |||| |||||| |||| | |||||||| || |||||| |||||   | ||| |||||||||||    
T  31423575 ccttttgaagatctttgt-gtccaaactactcaaggaattttaggtagttccacaagtacacaccttaacctcttca 31423650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 28202152 - 28202240
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    ||||||| ||||||||  | ||||||||||||||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||    
T  28202152 cttaaccccttcagcccacggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggaattttaggtagttccacaag 28202240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 47179147 - 47179023
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||| |    
T  47179147 tccacaagtatacacctc--aaccacttcagccatcggaatatcttccgccttctcgaaggtccttgcagtccaactacactaggagttttaggtagtcc 47179050  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  47179049 cacaagctttcaccataacatcttcaa 47179023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 25127553 - 25127438
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||| | |||||||| | |||||||||||||||||||| ||| |||||| |||||||||||||  | ||||||||||| ||||| ||||| ||| |||    
T  25127553 catcaatcgccttgctgttttttcccttgcttcccactacaccatgtagcttcacaagtttacac--cctaacctcttcaaccatcggaatgcctttcgc 25127456  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | ||||||||||||    
T  25127455 ccttttgaagatccttgt 25127438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 31423829 - 31423951
Alignment:
Q  82 taacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataac 181  Q
    ||||| |||||||| || ||||||||||||||||||||||| |||||  ||||||||||| |||| ||||| || |||||| |||||  |  |||||||     
T  31423829 taaccccttcagccctcggaatgtcttccgccttctcgaaggtccttacagtccaactacactagaaattttaggtagttccacaagcattcaccataat 31423928  T
Q  182 ctcttcaatacgagacatctccc 204  Q
    |||||||| ||  ||||||||||    
T  31423929 ctcttcaacacaggacatctccc 31423951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 155385 - 155234
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||| | ||| |||||||||||| |||||||| ||| |||||||||||||||| ||||    |||||||||| ||||| ||||| |||| ||    
T  155385 catcaaccacctcggtgccctttcccttgctccccactacaccatgtagctccacaagtttccacc---caacctcttcaaccatcggaatgccttctgc 155289  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    ||||| | ||||  ||| | ||||||||| |||||||||| || |||||| |||||    
T  155288 cttcttggagattattgca-tccaactacactaggaattttaggtagttccacaag 155234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 16430774 - 16430721
Alignment:
Q  22 ccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttac 75  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  16430774 ccttgctgctctttcccttggttcccactacaccaagtagctccacaagtttac 16430721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 25127295 - 25127207
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaa 167  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||| |||||| ||||||||||| |||||| ||| || |||||| ||||    
T  25127295 cttaacctcttcagccatcggaacgtcttccgccttcttgaagagtccttgcagtccaactacactaggagttttaggtagttccacaa 25127207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 25249451 - 25249567
Alignment:
Q  88 cttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttc 187  Q
    |||||||| || ||||||||| | ||||||||||| || ||| |||||||||||||||||||||| || |||||| |||||  |  |||||||| |||||    
T  25249451 cttcagccctcggaatgtctttcaccttctcgaaggtcgttgcagtccaactacgctaggaattttaggtagttccacaagcattcaccataacatcttc 25249550  T
Q  188 aatacgagacatctccc 204  Q
    || ||  ||||||||||    
T  25249551 aacacaggacatctccc 25249567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 31736320 - 31736430
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || |||| | |||||  |  |||||    
T  31736320 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccat 31736419  T
Q  179 aacctcttcaa 189  Q
    ||| |||||||    
T  31736420 aacatcttcaa 31736430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 25127371 - 25127283
Alignment:
Q  100 gaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    ||||||||||||||||||||||| || ||| ||||||||||| |||||||||| || |||||| |||||  |  ||| |||||||||||    
T  25127371 gaatgtcttccgccttctcgaaggtctttgcagtccaactacactaggaattttaggtagttccacaagcattcaccttaacctcttca 25127283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 6997172 - 6997107
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacc 78  Q
    |||||||| || ||||||||||| |||||||||||||||  |||||| ||| ||||||||||||||    
T  6997172 catcaaccaccgtgctgctctttaccttgcttcccactataccaagttgcttcacaagtttacacc 6997107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 14098715 - 14098840
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    |||||||| || ||||||| ||| ||||||||  |||||||||| |||||| ||||||||||| |||||| ||| || |||||| |||||  |  |||||    
T  14098715 cttaacctttttagccatcggaacgtcttccgttttctcgaagagtccttgcagtccaactacactaggagttttaggtagttccacaagcattcaccat 14098814  T
Q  179 aacctcttcaatacgagacatctccc 204  Q
    ||| ||||||| ||  ||||||||||    
T  14098815 aacatcttcaacacaggacatctccc 14098840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 10742308 - 10742240
Alignment:
Q  83 aacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaattt 152  Q
    |||||||||| ||||| ||||| ||| |||||||| ||||||||||| | ||||||||| ||||||||||    
T  10742308 aacctcttcaaccatcggaatgcctttcgccttcttgaagatccttgca-tccaactacactaggaattt 10742240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 28997281 - 28997322
Alignment:
Q  137 actacgctaggaatttcagatagttctacaagactataccat 178  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  28997281 actacgctaggaattttaggtagttctacaagactataccat 28997322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 29002997 - 29003038
Alignment:
Q  137 actacgctaggaatttcagatagttctacaagactataccat 178  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  29002997 actacgctaggaattttaggtagttctacaagactataccat 29003038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 13548115 - 13548203
Alignment:
Q  100 gaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    ||||| |||||||| ||| |||| |||||| | ||||||||  |||||| ||| || |||||| ||||| ||| ||||||||||||||||    
T  13548115 gaatgccttccgccctcttgaagttccttgca-tccaactaaactaggatttttaggtagttccacaagcctacaccataacctcttcaa 13548203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 28221514 - 28221559
Alignment:
Q  33 tttcccttgcttcccactactccaagtagctccacaagtttacacc 78  Q
    |||||||||| ||| ||||| |||||||||||||||||| ||||||    
T  28221514 tttcccttgcatccaactacaccaagtagctccacaagtatacacc 28221559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 27829056 - 27828843
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27829056 atcatcaacatccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcggaatgtcttcc 27828957  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  ||      
T  27828956 gccttctcgaagatccttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgaaacatctcccgcttaa 27828857  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  27828856 cttgaagatctact 27828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 18812631 - 18812420
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||||| |||||||||||    
T  18812631 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacaccc--taacctctccagccatcggaatgtcttcc 18812534  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    ||||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||  || |    
T  18812533 gccttcttgaagatgcttgtagtccaactacgctaggaatttaaggtagttctacaagactataccataatctcttcaatacgagacatctcccgctttc 18812434  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  18812433 cttgaagatctact 18812420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 43081685 - 43081473
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||  ||| |||||||||||    
T  43081685 atcatcaacctcctttctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagtaatcggaatgtcttcc 43081587  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  43081586 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 43081487  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  43081486 cttgaagatctact 43081473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 41384435 - 41384242
Alignment:
Q  28 tgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatcct 127  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||  |    
T  41384435 tgctctttcccttgcttcccactacaccaagtagcttcacaagtttacaccc--taacctcttcagccatcggaatgtcttccgccttctcgaagatgtt 41384338  T
Q  128 tgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  41384337 tgtagtccaactacgctagaaatttcaggtagttctacaagactataccataacctcttcaatacgagacatatcccgctt-ccttgaagatctact 41384242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 15072440 - 15072289
Alignment:
Q  35 tcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtc 134  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||| |||| ||||||| |||||||||| |||||| ||||    
T  15072440 tcccttgcttcccactacaccaagtagctccacaagtttacac-tct-aaccccttcagccatcggaatatcttccgtcttctcgaaggtccttgcagtc 15072343  T
Q  135 caactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    ||||||| |||||||||| || |||||| |||||  |  ||| |||||||||||    
T  15072342 caactacactaggaattttaggtagttccacaagcattcaccttaacctcttca 15072289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 27828811 - 27828687
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||| ||||| |||||||| || |||||||||| |||||||||||| |||||||||||||||||| |||||||||| || |||| |    
T  27828811 tccacaagtatacacctcataaccccttcagccctcggaatgtcttctgccttctcgaaggtccttgtagtccaactacactaggaattttaggtagtcc 27828712  T
Q  163 tacaagactataccataacctcttc 187  Q
     |||||  | ||||||||| |||||    
T  27828711 cacaagcatttaccataacatcttc 27828687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 15072301 - 15072177
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || ||||||||||||  |  |||||    
T  15072301 cttaacctcttcagccatcagaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagttctacaagcattcaccat 15072202  T
Q  179 aacctcttcaatacgagacatctcc 203  Q
    ||| ||||||| ||  |||||||||    
T  15072201 aacatcttcaacacaggacatctcc 15072177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 17849468 - 17849316
Alignment:
Q  34 ttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagt 133  Q
    ||||||||||||| ||||| ||||||| |||||||||||| ||  || |  |||||||| ||||| ||||| |||||||||||| ||||||||||| | |    
T  17849468 ttcccttgcttccaactacaccaagtatctccacaagtttcca--tccttgcctcttcaaccatcggaatgccttccgccttcttgaagatccttgca-t 17849372  T
Q  134 ccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    |||||||| |||||||||| || |||||| ||||| ||| |||| | |||||||||    
T  17849371 ccaactacactaggaattttaggtagttccacaagtctacaccaaaccctcttcaa 17849316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 41384210 - 41384071
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  |||| |||||| | |||||||||||||||||||||||||| |||||| |||| |||||||||||| |||| || ||||||    
T  41384210 tccacaagtatacacctc--aaccccttcagtcctcagaatgtcttccgccttctcgaaggtccttgaagtctaactacgctaggtattttaggtagttc 41384113  T
Q  163 tacaagactataccataacctcttcaatacgagacatctccc 204  Q
     |||||  |  |||||||| ||||||| ||  ||||||||||    
T  41384112 cacaagcattcaccataacatcttcaacacaggacatctccc 41384071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 31574293 - 31574401
Alignment:
Q  14 atcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgcc 113  Q
    ||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||||    |||||||||| || ||  |||||||||||||    
T  31574293 atcaaccaccttgctgctctttccctcgcttccaactacaccaagtagctccacaagtttccacc---caacctcttcaaccttcgaaatgtcttccgcc 31574389  T
Q  114 ttctcgaagatc 125  Q
    |||| |||||||    
T  31574390 ttcttgaagatc 31574401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 21482081 - 21482015
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacct 79  Q
    |||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  21482081 catcaaccaccatgctgctctttcccttgcttcccactacaccatgtagctccacaagtttacacct 21482015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 43081438 - 43081358
Alignment:
Q  66 acaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    |||||| ||||||||  |||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  43081438 acaagtatacacctc--aaccacttcagccatcagaatatcttccgccttctcgaaggtccttgcagtccaactacactagga 43081358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 14418788 - 14418838
Alignment:
Q  117 tcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaa 167  Q
    ||||||||||||| | ||||||||||||||||||||||  |||||||||||    
T  14418788 tcgaagatccttgcaatccaactacgctaggaatttcatgtagttctacaa 14418838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 18960046 - 18959981
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacc 78  Q
    |||||||| |||| ||||||||||||||||||| ||||||  || ||||||||| |||||| ||||    
T  18960046 catcaaccacctttctgctctttcccttgcttctcactacatcatgtagctccagaagtttccacc 18959981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 42435993 - 42436141
Alignment:
Q  37 ccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtcca 136  Q
    |||||| ||| ||||| ||||||||||||||||| || ||||  |  ||||||||| || || ||||| || ||||  ||| ||||||||||| | ||||    
T  42435993 ccttgcgtccaactacaccaagtagctccacaagcttccacccttgtacctcttcaaccctcggaatgcctcccgctctcttgaagatccttgca-tcca 42436091  T
Q  137 actacgctaggaatttcagatagttctacaagactataccataacctcttc 187  Q
    || || ||||| |||| || |||||| ||||| ||  ||||||||||||||    
T  42436092 accacactagg-attttaggtagttccacaagtctccaccataacctcttc 42436141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 1047540 - 1047751
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  1047540 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacaccc--taacctcttcagccatcggaatgtcttcc 1047637  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  1047638 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 1047737  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  1047738 cttgaagatctact 1047751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 7349903 - 7350115
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  7349903 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 7350001  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  7350002 gccttctcgaagatgcttgtagtccaactacgctaggaattttaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 7350101  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  7350102 cttgaagatctact 7350115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 22136841 - 22136629
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  22136841 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 22136743  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  22136742 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 22136643  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  22136642 cttgaagatctact 22136629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 40551868 - 40551656
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  40551868 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 40551770  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  40551769 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 40551670  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  40551669 cttgaagatctact 40551656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 44277 - 44065
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||| ||||||| |||||||| ||    
T  44277 atcatcaacatccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacac--cctaacctctttagccatcggaatgtctacc 44180  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc-tacaagactataccataacctcttcaatacgagacatctcccatttc 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  ||     
T  44179 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttcttacaagactataccataacctcttcaatacgagacatctcccgcttt 44080  T
Q  210 ccttgaagatctact 224  Q
    |||||||||||||||    
T  44079 ccttgaagatctact 44065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 31156536 - 31156747
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||| |||||||||||    
T  31156536 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacaccc--taacctcttcagtcatcggaatgtcttcc 31156633  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |  || |    
T  31156634 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctctcgctttc 31156733  T
Q  211 cttgaagatctact 224  Q
    ||||||||| ||||    
T  31156734 cttgaagatatact 31156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 7092804 - 7092981
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  7092804 atcatcaacctccttgttgctctttcccttgcttcccactacaccaagtagctccacaagtttacacctcataaccccttcagctctcagaatgtcttcc 7092903  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||||| ||||||||||||||||||||||||||||| || |||||| |||||  |  ||| |||||||||||    
T  7092904 gccttctcgaaggtccttgtagtccaactacgctaggaattttaggtagttccacaagcattcaccttaacctcttca 7092981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 28487195 - 28487032
Alignment:
Q  25 tgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagat 124  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||| | |||||||||||||||| |    
T  28487195 tgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacctctaaaccccttcagccatcggaatattttccgccttctcgaaggt 28487096  T
Q  125 ccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||||||||||||||||||||| || |||||| |||||  |  ||| |||||||||||    
T  28487095 ccttgtagtccaactacgctaggaattttaggtagttccacaagcattcaccttaacctcttca 28487032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 21679718 - 21679565
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || || ||||| |||||||||||||||| || |||||||||||||||||||||||||   ||||| ||||||||||| || ||||||||||    
T  21679718 catcaaccaccatgttgctccttcccttgcttcccaccacaccaagtagctccacaagtttacaccc--taaccccttcagccatcggattgtcttccgc 21679621  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    |||||||||| |||||| |||||||||||||||||||||| || |||||| |||||    
T  21679620 cttctcgaaggtccttgcagtccaactacgctaggaattttaggtagttccacaag 21679565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 38395932 - 38395768
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||  ||||||| || |||||||||||||||||||||||     
T  38395932 ttgctgctctttcccttgcttcccactacaccaagtagcttcacaagtttacacctcataaccctttcagccctcggaatgtcttccgccttctcgaagg 38395833  T
Q  124 tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||| ||||||||||| |||||| ||| || |||| | |||||  |  ||| |||||||||||    
T  38395832 tccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccttaacctcttca 38395768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 9680342 - 9680200
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||     
T  9680342 cttaacctcttcagccatcggaatgtcttccgccttctcgaagatgcttgtagtccaattatgctaggaatttcaggtagttctacaagactataccat- 9680244  T
Q  180 acctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
     | ||||||| ||  ||||||||||  || |||||||||||||||    
T  9680243 gcttcttcaacacaggacatctcccgctt-ccttgaagatctact 9680200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 7470663 - 7470837
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || || |||||||||||||| |||||||||| ||||||||||||||||||||||||||| || || |||||||| || |||||||||||||    
T  7470663 catcaaccaccatgatgctctttcccttg-ttcccactacaccaagtagctccacaagtttacacctcatagccccttcagccctcggaatgtcttccgc 7470761  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||| |||||| |||||||||||  ||||||||| || |||| | |||||  |  ||| |||||||||||    
T  7470762 cttctcgaaggtccttgcagtccaactacattaggaattttaggtagtaccacaagcattcaccttaacctcttca 7470837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 9680503 - 9680330
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||  | ||||||||||||||||| ||||| |||||||    
T  9680503 catcaacctccttgctgctctttcccttgcgtcgtactacaccaagtagctccacaagtttacac--cctaacctcttcagccatcggaatgccttccgc 9680406  T
Q  113 cttctcgaagatccttgtagtcc-aactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    | | | |||||||||||| |||| |||||| | |||||||| || ||||||||||||   ||||| |||||||||||    
T  9680405 ccttttgaagatccttgt-gtccaaactactcaaggaattttaggtagttctacaagtacataccttaacctcttca 9680330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 20299113 - 20298998
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||  | | ||||||||| ||||| ||||| |||||||    
T  20299113 catcaaccaccatgctgctctttcccttgcttcccacgacaccaagtagctccacaagtttacac--cctgacctcttcaaccatcggaatgccttccgc 20299016  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | ||||||||||||    
T  20299015 ccttttgaagatccttgt 20298998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 24815665 - 24815835
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    |||| |||| ||||| ||| | |||||||    
T  24815665 catcaaccaccatgctgatctttcccttgctttccactacaccaagtagctccacaagtttacacctt---acctgttcaaccatccgaacgccttccgc 24815761  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    ||| | |||||| |||| | |||||||||||||||||||| || ||| || |||||   | ||| |||||||||||    
T  24815762 cttgt-gaagattcttgca-tccaactacgctaggaattttaggtagctccacaagtacacaccttaacctcttca 24815835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 20298952 - 20298844
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||  |  ||| ||    
T  20298952 cttaaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggaattttaggtagttccacaagcattcacctta 20298853  T
Q  180 acctcttca 188  Q
    |||||||||    
T  20298852 acctcttca 20298844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 44726417 - 44726293
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| || ||||||||||||||||||||||| || ||| ||||||||||| |||||||||| || |||||| |||||  |  ||||||    
T  44726417 cttaaccccttcagccctcggaatgtcttccgccttctcgaaggtcattgcagtccaactacactaggaattttaggtagttccacaagcattcaccata 44726318  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  44726317 acatcttcaacacaggacatctccc 44726293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 24815803 - 24815910
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    ||||||||||||||  ||||||  ||||||||||||||||| |||||| |||||||||||||||| |||||| |  |||||||| |||||||||| || |    
T  24815803 gtagctccacaagtacacacct--taacctcttcagccatcggaatgtattccgccttctcgaaggtccttgca-cccaactacactaggaattttaggt 24815899  T
Q  158 agttctacaag 168  Q
    |||||||||||    
T  24815900 agttctacaag 24815910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 44033 - 43909
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||| |    
T  44033 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggagttttaggtagtcc 43936  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  43935 cacaagcattcaccataacatcttcaa 43909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 1047783 - 1047907
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||| |    
T  1047783 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggagttttaggtagtcc 1047880  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  1047881 cacaagcattcaccataacatcttcaa 1047907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 44726577 - 44726480
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||  |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||  | | ||||||||| ||||| ||||| |||||||    
T  44726577 catcaactaccttgctgctctttcccttg-ttcccactacaccaagtagctccacaagattacac--cctgacctcttcaaccatcggaatgccttccgc 44726481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 4509627 - 4509753
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    |||| ||||||||||| ||||| |  |||||||||  | || ||||| |||||||||||| |||| |||||| | ||||||||| |||||| ||| ||||    
T  4509627 gtagttccacaagttttcaccttt--acctcttcaaacttcggaatgccttccgccttcttgaagttccttgca-tccaactacactaggatttttagat 4509723  T
Q  158 agttctacaagactataccataacctcttc 187  Q
    ||||| ||||| ||| ||||||||||||||    
T  4509724 agttccacaagcctacaccataacctcttc 4509753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 4511469 - 4511595
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    |||| ||||||||||| ||||| |  |||||||||  | || ||||| |||||||||||| |||| |||||| | ||||||||| |||||| ||| ||||    
T  4511469 gtagttccacaagttttcaccttt--acctcttcaaacttcggaatgccttccgccttcttgaagttccttgca-tccaactacactaggatttttagat 4511565  T
Q  158 agttctacaagactataccataacctcttc 187  Q
    ||||| ||||| ||| ||||||||||||||    
T  4511566 agttccacaagcctacaccataacctcttc 4511595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 20298759 - 20298649
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || |||| | |||||  |  |||||    
T  20298759 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccat 20298660  T
Q  179 aacctcttcaa 189  Q
    ||| |||||||    
T  20298659 aacatcttcaa 20298649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 21679557 - 21679447
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    |||||||||||| |||||| ||| |||| ||||||||||||||| |||||| ||||||||||| |||||||||| |  |||||| |||||  |  |||||    
T  21679557 cttaacctcttctgccatcggaacgtctcccgccttctcgaagagtccttgcagtccaactacactaggaattttatgtagttcgacaagcattcaccat 21679458  T
Q  179 aacctcttcaa 189  Q
    ||| |||||||    
T  21679457 aacatcttcaa 21679447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 22136597 - 22136514
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || |||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  22136597 tccacaagtatacacctc--aaccccttcagccctcggaatatcttccgccttctcgaaggtccttgcagtccaactacactagga 22136514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 40551624 - 40551541
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || |||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  40551624 tccacaagtatacacctc--aaccccttcagccctcggaatatcttccgccttctcgaaggtccttgcagtccaactacactagga 40551541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 20298856 - 20298787
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  20298856 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactagga 20298787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 7470825 - 7470949
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| | | |||||| ||||||||||| || |||| | |||||  |  |||||    
T  7470825 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcacttcaactatgctaggaattttaggtagtcccacaagcattcaccat 7470924  T
Q  179 aacctcttcaatacgagacatctcc 203  Q
    ||| ||||||| ||  |||||||||    
T  7470925 aacatcttcaacacaggacatctcc 7470949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 7092969 - 7093100
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||| | ||||||||||| |||||| ||||||||||| |||||| ||| || |||| | |||||  |  |||||    
T  7092969 cttaacctcttcagccatcggaacgtcttcggtcttctcgaagagtccttgcagtccaactacactaggatttttaggtagtcccacaagcattcaccat 7093068  T
Q  179 aacctcttcaatacgagacatctcccatttcc 210  Q
    ||| |||||||  |  ||||||||||| ||||    
T  7093069 aacatcttcaacgcaggacatctcccacttcc 7093100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7350147 - 7350228
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctag 146  Q
    ||||||||| ||||||||  || | |||||||| |  ||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  7350147 tccacaagtatacacctc--aatcccttcagcccttggaatgtcttccgccttctcgaaggtccttgcagtccaactacactag 7350228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 31156779 - 31156904
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| ||||||||  |||| ||||||||||| |||| ||||||||  ||||||||| |||||| ||||||||||| |||||| ||| || ||||     
T  31156779 tccacaagtatacacctc--aaccccttcagccatcggaatatcttccgcactctcgaagagtccttgcagtccaactacactaggagttttaggtagtc 31156876  T
Q  162 ctacaagactataccataacctcttcaa 189  Q
    | |||||  |  |||||||| |||||||    
T  31156877 ccacaagctttcaccataacatcttcaa 31156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 6067777 - 6067931
Alignment:
Q  33 tttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaag---atccttg 129  Q
    |||||||| ||||| ||||| ||  |||||||||||||||| ||||    |||||||||| ||||| |||||||||||||||||| ||||   |||||||    
T  6067777 tttcccttccttccaactacacct-gtagctccacaagtttccaccc---aacctcttcaaccatcggaatgtcttccgccttcttgaagaccatccttg 6067872  T
Q  130 tagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
     | ||||||||| |||| ||||| || || || |||||| ||| || ||||||| |||||    
T  6067873 ca-tccaactacactagaaattttaggtaattttacaagtctacacaataacctattcaa 6067931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 26214595 - 26214491
Alignment:
Q  34 ttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagt 133  Q
    |||| |||||||| ||||| ||||||||||||| ||| || |||| |||  |||||||| ||||||||||| |||||||||| | |||| |||||||| |    
T  26214595 ttcctttgcttccaactacaccaagtagctccataagcttccacc-cttg-cctcttcaaccatcagaatgacttccgcctttttgaagttccttgta-t 26214499  T
Q  134 ccaactac 141  Q
    ||||||||    
T  26214498 ccaactac 26214491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 9680168 - 9680065
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| |||| ||| ||  |||||||||| ||||||||||| |||||| ||||  |||||||||| ||||| || ||||||    
T  9680168 tccacaagtatacacct--taaccccttcggccctcgtaatgtcttccaccttctcgaaggtccttgcagtcagactacgctagaaattttaggtagttc 9680071  T
Q  163 tacaag 168  Q
     |||||    
T  9680070 cacaag 9680065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 38395780 - 38395711
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    ||||||||||||||||||| ||| ||||||   ||||||||||| |||||| ||||||||||| ||||||    
T  38395780 cttaacctcttcagccatcggaacgtcttctctcttctcgaagagtccttgcagtccaactacactagga 38395711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 28487044 - 28486982
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactac 141  Q
    ||||||||||||||||||| ||| |||||||| |||||| |||| ||||||  ||||||||||    
T  28487044 cttaacctcttcagccatcggaacgtcttccgtcttctctaagagtccttgcggtccaactac 28486982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 6048354 - 6048210
Alignment:
Q  34 ttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaag---atccttgt 130  Q
    ||||||||||| | ||||| | | ||||||||||||| || ||||    |||||||| | ||||| ||||| |||||||||||| ||||   |||||||     
T  6048354 ttcccttgctttcaactacacaatgtagctccacaagcttccaccc---aacctctttaaccatcggaatgccttccgccttcttgaagaccatccttgc 6048258  T
Q  131 agtccaactacgctaggaatttcagatagttctacaagactataccataa 180  Q
    | ||||||||| ||||| |||| || |||||||||||| ||| |||||||    
T  6048257 a-tccaactacactagg-attttaggtagttctacaagtctacaccataa 6048210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 22044967 - 22045178
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  22044967 atcatcaaccaccttgttgctctttcccttgcttcccactactccaagtagctccacaagtttacaccc--taacctcttcagccatcggaatgtcttcc 22045064  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  22045065 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 22045164  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  22045165 cttgaagatctact 22045178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 22133026 - 22133215
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||    
T  22133026 catcaaccaccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacaccc--taacctcttcagccatcaaaatgtcttccgc 22133123  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctccc 204  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22133124 cttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctccc 22133215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 22780989 - 22781199
Alignment:
Q  14 atcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc-gc 112  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||    
T  22780989 atcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcccgc 22781087  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttccct 212  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || |||    
T  22781088 cttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttcct 22781187  T
Q  213 tgaagatctact 224  Q
    ||||||||||||    
T  22781188 tgaagatctact 22781199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 16932397 - 16932608
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  16932397 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacaccc--taacctcttcagccatcggaatgtcttcc 16932494  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||  || |    
T  16932495 gtcttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatatgagatatctcccgctttc 16932594  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  16932595 cttgaagatctact 16932608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 9174721 - 9174933
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||     
T  9174721 atcatcaacctccttgttgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttct 9174819  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||   || |    
T  9174820 gccttctcgaagatgcttggagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctccagctttc 9174919  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  9174920 cttgaagatctact 9174933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 11006818 - 11007030
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||     
T  11006818 atcatcaacctccttgctgctcaaacccttgcttcccactattccaagtagctccacaagtttacacct-tcaacctcttcagccatcggaatatcttct 11006916  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  11006917 gccttctcgaagatgcttgtagttcaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 11007016  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  11007017 cttgaagatctact 11007030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 12401386 - 12401559
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||| | |||||||||||||||||||||||    
T  12401386 catcaatcaccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacaccc--taaccccgtcagccatcagaatgtcttccgc 12401483  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||| |||||| ||||||||||  |||||||||| || |||||| |||||  |  ||| |||||||||||    
T  12401484 cttctcgaaggtccttgcagtccaactaaactaggaattttaggtagttccacaagcattcaccttaacctcttca 12401559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 12396444 - 12396617
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||| | ||||||||| |||||||||||||    
T  12396444 catcaatcaccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacaccc--taaccccgtcagccatctgaatgtcttccgc 12396541  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||| |||||| ||||||||||  |||||||||| || |||||| |||||  |  ||| |||||||||||    
T  12396542 cttctcgaaggtccttgcagtccaactaaactaggaattttaggtagttccacaagcattcaccttaacctcttca 12396617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 3825167 - 3825331
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    |||||||||||||||||||||||  |||| ||||||| ||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||     
T  3825167 ttgctgctctttcccttgcttcctgctacaccaagtaactccacaagtttacaccccttaaacccttcagccctcagaatgtcttccgccttctcgaagg 3825266  T
Q  124 tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||| ||||||||||  ||| |||||| || |||||| |||||  |  ||| |||||||||||    
T  3825267 tccttgcagtccaactatactatgaattttaggtagttccacaagcattcaccttaacctcttca 3825331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 36379979 - 36379816
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagat 157  Q
    ||||||||||||||  ||||||  ||||||||| ||| ||| |||||||||| |||||||||||||||||||||  | |||||| ||||||||||||  |    
T  36379979 gtagctccacaagtacacacct--taacctctttagctatcggaatgtcttctgccttctcgaagatccttgtatccaaactacactaggaatttcaagt 36379882  T
Q  158 agttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    | |||||||||||||||||||||||||||||||||   |||||||||  || |||||||||||||||    
T  36379881 aattctacaagactataccataacctcttcaatacagaacatctcccgctt-ccttgaagatctact 36379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 22801400 - 22801517
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | || |||||||| ||||| ||||| |||||    
T  22801400 atcatcaacctccttgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacac--cctatcctcttcaaccatcggaatgccttcc 22801497  T
Q  111 gccttctcgaagatccttgt 130  Q
    ||| | | ||||||||||||    
T  22801498 gcccttttgaagatccttgt 22801517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 5100538 - 5100406
Alignment:
Q  83 aacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacc 182  Q
    |||||||||||||||| |||||||||||||||| ||||  || |||||||||||||||||||||||||||||| |||||||||||||||||       ||    
T  5100538 aacctcttcagccatcggaatgtcttccgccttttcgat-atgcttgtagtccaactacgctaggaatttcaggtagttctacaagactat-------cc 5100447  T
Q  183 tcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  5100446 tcttcaatacgagacatctcccgctt-ccttgaagatctact 5100406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 16454999 - 16454857
Alignment:
Q  22 ccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaa 121  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||  ||||||| |||||| |||| |||||||||| |||||||||||    
T  16454999 ccttgctgctctttcccttgctttctactacaccaagtagctccacaagttttcac--cttaacc-cttcagtcatcggaatgtcttctgccttctcgaa 16454903  T
Q  122 gatccttgtagtccaactacgctaggaatttcagatagttctacaa 167  Q
    | |||||| ||||||||||| ||| |||||| || |||||| ||||    
T  16454902 ggtccttgcagtccaactacactaagaattttaggtagttccacaa 16454857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 47564459 - 47564344
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||  | ||||||||||| ||||| ||||||||||| |    
T  47564459 catcaaccaccttgctgctctttcccttgctttccactacaccaagtagctccacgagtttacac--cataacctcttcaaccatcggaatgtcttcctc 47564362  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | ||||||||||||    
T  47564361 ccttttgaagatccttgt 47564344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 36920332 - 36920447
Alignment:
Q  88 cttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttc 187  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||||| |||||  |  ||||||| ||||||    
T  36920332 cttcaaccatcagaatgtcttccgccttctcgaaggtccttgcagtccaactacgctaggaattttaggtagttccacaagcattcaccataatctcttc 36920431  T
Q  188 aatacgagacatctcc 203  Q
    || ||  |||||||||    
T  36920432 aacacaggacatctcc 36920447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 5100701 - 5100586
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||||  | ||||||||||| ||||| ||||| |||||||    
T  5100701 catcaaccaccatgctgctctttcccttgcttcccactacaccaagtagcttcacaagtttacac--cctaacctcttcaaccatcggaatgccttccgc 5100604  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | ||||||| ||||    
T  5100603 ccttttgaagatctttgt 5100586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 36920165 - 36920279
Alignment:
Q  14 atcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgcc 113  Q
    ||||||| |||||||||||||||||||||||| |||||  | ||||||||||||||||||||||  | ||||||||||| ||||| ||||| ||||||||    
T  36920165 atcaaccaccttgctgctctttcccttgcttctcactatactaagtagctccacaagtttacac--cctaacctcttcaaccatcggaatgccttccgcc 36920262  T
Q  114 ttctcgaagatccttgt 130  Q
     | | ||||||||||||    
T  36920263 cttttgaagatccttgt 36920279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 47564298 - 47564189
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||||| || |||||  |||||  |  ||||||    
T  47564298 cttaaccccttcagccatcagaatattttccgccttctcgaaggtccttgcagtccaactacgctaggaattttaggtagtttcacaagcattcaccata 47564199  T
Q  180 acctcttcaa 189  Q
    ||||||||||    
T  47564198 acctcttcaa 47564189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 14788063 - 14788178
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||||||| | |||||||||||||  | ||||||||||| ||||| |||||||||||||    
T  14788063 catcaaccaccaagctgctctttcccttgcttcccactacaccaagtagtttcacaagtttacac--cctaacctcttcaaccatcggaatgtcttccgc 14788160  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | | ||||||||||    
T  14788161 ccttttgtagatccttgt 14788178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 16932640 - 16932782
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| |||||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||| |||||| ||| || ||||     
T  16932640 tccacaagtatacacctcataaccacttcagccatcggaatatcttccgccttctcgaagagtccttgcagtccaactacactaggagttttaggtagtc 16932739  T
Q  162 ctacaagactataccataacctcttcaatacgagacatctccc 204  Q
    | |||||  |  |||||||| ||||||| ||  ||||||||||    
T  16932740 ccacaagcattcaccataacatcttcaacacaggacatctccc 16932782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 36380119 - 36380023
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccg 111  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||||||||||||||||   | ||||||||||| ||||| ||||| ||||||    
T  36380119 catcaaccaccatgctgctctttcccttgcttcccactagaccaagtagctccacaagtttaca--acctaacctcttcaaccatcggaatgccttccg 36380023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 11007062 - 11007187
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| ||||||||  |||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||| ||| || ||||     
T  11007062 tccacaagtatacacctc--aaccacttcagccatcagaatatcttccgccttctcgaagagtccttgcagtccaactacactaggagttttaggtagtc 11007159  T
Q  162 ctacaagactataccataacctcttcaa 189  Q
    | |||||  |  |||||||| |||||||    
T  11007160 ccacaagctttcaccataacatcttcaa 11007187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 14788224 - 14788348
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||| | || ||||||||||||||||||||||| |||||| |||||| |||| |||||||||| || |||||| |||||  |  ||||||    
T  14788224 cttaaccccttcagacctcggaatgtcttccgccttctcgaaggtccttgcagtccatctacactaggaattttaggtagttccacaagcattcaccata 14788323  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  14788324 acatcttcaacacaggacatctccc 14788348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 18535387 - 18535512
Alignment:
Q  22 ccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaa 121  Q
    |||||||||||||| ||||||||||||||||  || |||||||||||||||||||||   | ||||||||||||||  ||||| |||||||| ||| |||    
T  18535387 ccttgctgctcttttccttgcttcccactacatcatgtagctccacaagtttacacc---ttacctcttcagccattggaatgccttccgcc-tcttgaa 18535482  T
Q  122 gatccttgtagtccaactacgctaggaattt 152  Q
    ||| |||| | ||||||||| |||| |||||    
T  18535483 gattcttgca-tccaactacactagaaattt 18535512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 24880053 - 24879965
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    ||||| |||||| ||| |||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||    
T  24880053 cttaatctcttctgccttcagaatgtcttccaccttctcgaaggtccttgcagtccaactactctaggaattttaggtagttccacaag 24879965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 9174965 - 9175089
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| |||||||| || |||| |||||||||||||||||| |||||| ||||||||||| |||||||||| || |||| |    
T  9174965 tccacaagtatacacct--taaccccttcagccctcggaatatcttccgccttctcgaaggtccttgcagtccaactacactaggaattttaggtagtcc 9175062  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  9175063 cacaagcattcaccataacatcttcaa 9175089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 22045210 - 22045293
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  22045210 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactagga 22045293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 36379783 - 36379644
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| ||| ||||||| |||||  ||||| |||||||||| |||||| |||||||||||||| | ||||| || ||||||    
T  36379783 tccacaagtatacacct--taacccctttagccatcggaatgatttccgtcttctcgaaggtccttgcagtccaactacgctggcaattttaggtagttc 36379686  T
Q  163 tacaagactataccataacctcttcaatacgagacatctccc 204  Q
     |||||  |  |||||||| ||||||| || |||||||||||    
T  36379685 cacaagcattcaccataacatcttcaacacaagacatctccc 36379644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 16454848 - 16454723
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| || |||||||||||| |||| |||||| ||||||||||| |||||| ||| || |||||| |||||  |  |||||    
T  16454848 cttaacctcttcagccatcggaacgttttccgccttctcaaagagtccttgcagtccaactacactaggagttttaggtagttccacaagcattcaccat 16454749  T
Q  179 aacctcttcaatacgagacatctccc 204  Q
    ||| ||||||| ||  ||||||||||    
T  16454748 aacatcttcaacacaggacatctccc 16454723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 22801563 - 22801672
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||| ||| || ||||||||||||||||||||||  |||||| ||||||||||| |||||||||| || |||||| |||||  |  ||||||    
T  22801563 cttaaccccttctgccctcggaatgtcttccgccttctcgaatgtccttgcagtccaactacactaggaattttaggtagttccacaagcattcaccata 22801662  T
Q  180 acctcttcaa 189  Q
    || |||||||    
T  22801663 acatcttcaa 22801672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 18535536 - 18535592
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtcca 136  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  18535536 cttaaccccttcagccatcggaatgtcttccgccttctcgaaggtccttgtagtcca 18535592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 22781231 - 22781356
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| ||||||||  || | ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| || ||||     
T  22781231 tccacaagtatacacctc--aatcccttcagccatcggaatgtcttccgccttctcgaagagtccttgcagtccaactacactaggagttttaggtagtc 22781328  T
Q  162 ctacaagactataccataacctcttcaa 189  Q
    | |||||  |  |||||||| |||||||    
T  22781329 ccacaagcattcaccataacatcttcaa 22781356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 24880203 - 24880099
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    ||||||||| |||| |||||| ||||| | ||||||||||||||||||||||||  | ||||||||||| ||||| ||||| |||||||| | |  ||||    
T  24880203 ttgctgctccttcctttgctttccactgcaccaagtagctccacaagtttacac--cctaacctcttcaaccatcggaatgccttccgcccttttcaaga 24880106  T
Q  124 tccttgt 130  Q
    |||||||    
T  24880105 tccttgt 24880099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 3825319 - 3825405
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctac 165  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||| ||||||  || | ||||||||||    
T  3825319 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacactaggagatttatatagttctac 3825405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 18535627 - 18535700
Alignment:
Q  79 tcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaattt 152  Q
    |||||||||||||||||||| | | ||||||||| |||| ||||| ||||| ||||||||||| ||||||||||    
T  18535627 tcttaacctcttcagccatcgggacgtcttccgcgttctagaagagccttgcagtccaactacactaggaattt 18535700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 3577451 - 3577556
Alignment:
Q  86 ctcttcagccatcagaatgtcttccgccttctcgaaga---tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacc 182  Q
    ||||||| ||||| |||||||||||||||||| |||||   |||||| | ||||||||| |||||||||| || |||||| | ||| ||| |||||||||    
T  3577451 ctcttcaaccatcggaatgtcttccgccttcttgaagacaatccttgca-tccaactacactaggaattttaggtagttccataagtctacaccataacc 3577549  T
Q  183 tcttcaa 189  Q
    |||||||    
T  3577550 tcttcaa 3577556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 3577620 - 3577748
Alignment:
Q  58 gtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatc---cttgtagtccaactacgctaggaatttca 154  Q
    |||| ||||||||| ||||||   ||||||||||| ||||| ||||| |||||| ||||| |||||||   |||| | ||||||||| |||||||||| |    
T  3577620 gtagttccacaagtctacacca--taacctcttcaaccatcggaatgccttccgacttcttgaagatcatccttgca-tccaactacactaggaatttta 3577716  T
Q  155 gatagttctacaagactataccataacctctt 186  Q
    | |||||| ||||| ||| |||||||||||||    
T  3577717 ggtagttccacaagtctacaccataacctctt 3577748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 12396605 - 12396674
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    ||||||||||||||||||| ||| ||||| || |||||| |||| |||||| ||||||||||| ||||||    
T  12396605 cttaacctcttcagccatcggaacgtctttcgtcttctctaagagtccttgcagtccaactacactagga 12396674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 12401547 - 12401616
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    ||||||||||||||||||| ||| ||||| || |||||| |||| |||||| ||||||||||| ||||||    
T  12401547 cttaacctcttcagccatcggaacgtctttcgtcttctctaagagtccttgcagtccaactacactagga 12401616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 10114328 - 10114273
Alignment:
Q  134 ccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    |||||||| |||||||||| || |||||| |||||  |||||||||||||||||||    
T  10114328 ccaactacactaggaattttaggtagttccacaagtatataccataacctcttcaa 10114273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 19502587 - 19502798
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  19502587 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacaccc--taacctcttcagccatcggaatgtcttcc 19502684  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  || |    
T  19502685 gccttctcgaagatgcttgtagtccaactacgctaggagtttcaggtagctctacaagactataccataacctcttcaatacgagacatctcccgctttc 19502784  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  19502785 cttgaagatctact 19502798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 35216220 - 35216432
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  35216220 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacttcttcagccatcagaatgtcttcc 35216318  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  35216319 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 35216418  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  35216419 cttgaagatctact 35216432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 36559395 - 36559607
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  36559395 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 36559493  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  36559494 gccttctcgaagatgcttgtagtccaactacactaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 36559593  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  36559594 cttgaagatctact 36559607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 21518998 - 21519140
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||  ||||| ||||||||||| |||| ||||||||||||||||||     
T  21518998 ttgctgctctttcccttgcttcccactacaccaagtagctgcacaattttacacct--taaccccttcagccatcggaatatcttccgccttctcgaagg 21519095  T
Q  124 tccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    |||||| ||||||||||| |||||||||| || |||||| |||||    
T  21519096 tccttgcagtccaactacactaggaattttaggtagttccacaag 21519140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 6259559 - 6259682
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||| ||||||||||||||||||||||     
T  6259559 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtatccaaactacactaggaatttcaggtagttctacaagactataccat- 6259657  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  6259658 acttcttcaacacaggacatctccc 6259682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 31733465 - 31733624
Alignment:
Q  60 agctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatag 159  Q
    ||||||||||||  ||||||  ||||||||| ||||||| |||||||||| ||||||||||||| |||||||  | |||||| ||||||||||||| |||    
T  31733465 agctccacaagtacacacct--taacctctttagccatcggaatgtcttctgccttctcgaagaaccttgtatccaaactacactaggaatttcaggtag 31733562  T
Q  160 ttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatcta 222  Q
    ||||||||||||||| |||||||||||||||||   |||||||||  || |||||||||||||    
T  31733563 ttctacaagactatatcataacctcttcaatacagaacatctcccgctt-ccttgaagatcta 31733624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 13828881 - 13829053
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || || || |||||||||||||||| ||||| |||||||||||||  ||||| ||||    ||||| |||| |||||||||||||||||||    
T  13828881 catcaaccaccatgatgttctttcccttgcttccaactacaccaagtagctccatgagtttccaccc---aaccttttcaaccatcagaatgtcttccgc 13828977  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    ||||| |||||| |||| | ||||||||| |||| ||||| || |||||| |||||  || ||||||||||||||||    
T  13828978 cttcttgaagattcttgca-tccaactacactagaaattttagttagttccacaagtatacaccataacctcttcaa 13829053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 22405145 - 22405254
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||  |  ||||||    
T  22405145 cttaacctcttcagccatcggaatggcttccgccttctcgaagatccttgaagtccaactacactaggaattttaggtagttccacaagcattcaccata 22405244  T
Q  180 acctcttcaa 189  Q
    || |||||||    
T  22405245 acatcttcaa 22405254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 35216464 - 35216588
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||| |||| |    
T  35216464 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggagtttcaggtagtcc 35216561  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  35216562 cacaagcattcaccataacatcttcaa 35216588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 6259413 - 6259571
Alignment:
Q  28 tgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatcct 127  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||   ||||||||||| ||||| ||||| |||| ||| | | |||||||||    
T  6259413 tgctctttcccttgcttcccactataccatgtagctccacaagtttacaccc--taacctcttcaaccatcggaatgccttctgcccttttgaagatcct 6259510  T
Q  128 tgtagtccaa-ctacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    ||| |||||| |||| | |||||||| || |||||| |||||   | ||| |||||||||||    
T  6259511 tgt-gtccaaactactcaaggaattttaggtagttccacaagtgcacaccttaacctcttca 6259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 31733666 - 31733761
Alignment:
Q  73 tacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    ||||| ||||||| |||| ||||||| ||||||||||| ||||||| ||| |||||| |||||||||||||||| ||||| || |||||| |||||    
T  31733666 tacacatcttaacttctttagccatcggaatgtcttcctccttctcaaaggtccttgcagtccaactacgctagaaatttgaggtagttccacaag 31733761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 36559639 - 36559722
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || |||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  36559639 tccacaagtatacacctc--aaccccttcagccctcggaatatcttccgccttctcgaaggtccttgcagtccaactacactagga 36559722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 21519148 - 21519273
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||| ||||||| ||| |||||| | ||||||||||| |||||| ||||||||||| |||||| ||| || |||||| |||||  |  |||||    
T  21519148 cttaacctctttagccatcggaacgtcttctgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagttccacaagcattcaccat 21519247  T
Q  179 aacctcttcaatacgagacatctccc 204  Q
    ||| ||||||| ||  ||||||||||    
T  21519248 aacatcttcaacacaggacatctccc 21519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 31733336 - 31733388
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttaca 76  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  31733336 ttgctgctctttcccttgctttccactacaccatgtagctccacaagtttaca 31733388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 19502830 - 19502954
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||||  |||| |||||||| || |||||||||||||||||| |||| | |||| ||||||||||| |||||| ||| || |||| |    
T  19502830 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttcttgaaggttcttgcagtccaactacactaggagttttaggtagtcc 19502927  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  19502928 cacaagcattcaccataacatcttcaa 19502954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 6259748 - 6259808
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaacta 140  Q
    ||||||| |||||||| || |||| |||||| ||||||||||| |||||| ||||||||||    
T  6259748 cttaaccccttcagccctcggaatatcttccaccttctcgaaggtccttgcagtccaacta 6259808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 30262377 - 30262495
Alignment:
Q  33 tttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtag 132  Q
    ||||||||| |||| ||||| ||| |||| |||||||  || ||||  ||  |||||||| ||||||||||  ||||||||| || ||||||||||| |     
T  30262377 tttcccttggttccaactacaccatgtagttccacaaccttccaccctttttcctcttcaaccatcagaataccttccgcctacttgaagatccttgca- 30262475  T
Q  133 tccaactacgctaggaattt 152  Q
    ||||||||| |||| |||||    
T  30262476 tccaactacactagaaattt 30262495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 28568828 - 28568961
Alignment:
Q  34 ttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaag---atccttgt 130  Q
    |||||||| || | ||||| ||||||||||||||||| || ||||    |||||||||| |||   ||||| |||||||||||| ||||   |||||||     
T  28568828 ttcccttgtttacaactacaccaagtagctccacaagcttccacc---caacctcttcaaccactggaatgccttccgccttcttgaagaccatccttgc 28568924  T
Q  131 agtccaactacgctaggaatttcagatagttctacaag 168  Q
    | ||||||||| |||||||||| |  ||||||||||||    
T  28568925 a-tccaactacactaggaattttacgtagttctacaag 28568961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 41303707 - 41303744
Alignment:
Q  33 tttcccttgcttcccactactccaagtagctccacaag 70  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  41303707 tttcccttgcttccaactacaccaagtagctccacaag 41303744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 27912165 - 27911967
Alignment:
Q  25 tgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagat 124  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27912165 tgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacctcttaacctcttcagccatcggaatgtcttccgccttctcgaagat 27912066  T
Q  125 ccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
     ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  27912065 gcttgtagtcaaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctccca-ctaccttgaagatctact 27911967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 34477669 - 34477881
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  34477669 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 34477767  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||  || |    
T  34477768 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagtcctacaagactataccataacctcttcaatacgagatatctcccgctttc 34477867  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  34477868 cttgaagatctact 34477881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 10756923 - 10756710
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  10756923 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 10756825  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagac-tataccataacctcttcaatacgagacatctcccatttc 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||  ||     
T  10756824 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagacttataccataacctcttcaatacgagatatctcccgcttt 10756725  T
Q  210 ccttgaagatctact 224  Q
    |||||||||||||||    
T  10756724 ccttgaagatctact 10756710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 15355102 - 15355315
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||    
T  15355102 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacca-tcaacctcttcagccatcggaatgtcttcc 15355200  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagac-tataccataacctcttcaatacgagacatctcccatttc 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||     
T  15355201 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagacttataccataacctcttcaatacgagacatctcccgcttt 15355300  T
Q  210 ccttgaagatctact 224  Q
    |||||||||||||||    
T  15355301 ccttgaagatctact 15355315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 23667072 - 23666859
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||    
T  23667072 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacca-tcaacctcttcagccatcggaatgtcttcc 23666974  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagac-tataccataacctcttcaatacgagacatctcccatttc 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||     
T  23666973 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagacttataccataacctcttcaatacgagacatctcccgcttt 23666874  T
Q  210 ccttgaagatctact 224  Q
    |||||||||||||||    
T  23666873 ccttgaagatctact 23666859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 31544761 - 31544550
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  31544761 atcatcaaccaccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacaccc--taacctcttcagccatcggaatgtcttcc 31544664  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  31544663 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtggttctacaagactataccataacctcttcaatacgagatatctcccgctttc 31544564  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  31544563 cttgaagatctact 31544550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 18509949 - 18510157
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||    
T  18509949 catcaaccaccatgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacacct--taacctcttcaaccatcggaatgccttccgc 18510046  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttccct 212  Q
    | | | |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||  ||| |||||| ||| |||    
T  18510047 ccttttgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaatactataccataacctcttcaacacaggacctctcccgttt-cct 18510145  T
Q  213 tgaagatctact 224  Q
    ||||||||||||    
T  18510146 tgaagatctact 18510157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 6747007 - 6746850
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  6747007 atcatcaacctccttgttgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaaccccttcagccctcagaatgtcttcc 6746908  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    |||||||||||| |||||  |||||||||||||||||||||| || |||||| |||||    
T  6746907 gccttctcgaaggtccttacagtccaactacgctaggaattttaggtagttccacaag 6746850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 41586557 - 41586752
Alignment:
Q  25 tgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagat 124  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||| ||||| ||||| |||||||||||| ||||||    
T  41586557 tgctgctctttcccttgcttcccactacaccaagtagctccacaagtttacaccc--taacctcttcaaccatcggaatgccttccgccttcttgaagat 41586654  T
Q  125 ccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |   ||||||||||  || |||||||||||||||    
T  41586655 gcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccat-acttcttcaacataggacatctcccgctt-ccttgaagatctact 41586752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 659658 - 659496
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| ||||| |||||||||||||||||||||||     
T  659658 ttgctgctctttccattgcttcccactacaccaagtagctccacaagtttacacct--taaccccttcaaccatcggaatgtcttccgccttctcgaagg 659561  T
Q  124 tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||| ||||||||||| |||||||||| || |||||| |||||  |  ||| |||||||||||    
T  659560 tccttgcagtccaactacactaggaattttaggtagttccacaagcattcaccttaacctcttca 659496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 18468656 - 18468521
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||| || |||||||||||||    
T  18468656 catcaaccaccatactgctctttcccttgcttcccactacaccaagtagctccacaagtttacagctcataaccccttcagccctcggaatgtcttccgc 18468557  T
Q  113 cttctcgaagatccttgtagtccaactacgctagga 148  Q
    |||||| ||| ||||||||||||||| || ||||||    
T  18468556 cttctcaaaggtccttgtagtccaacaacactagga 18468521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 31466558 - 31466693
Alignment:
Q  31 tctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgt 130  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||   ||||| ||||||||||||||||||||||||||||||||||| ||||||     
T  31466558 tctttcccttgcttcccactacaccaagtagctccacaaatttacaccc--taaccccttcagccatcagaatgtcttccgccttctcgaaggtccttgc 31466655  T
Q  131 agtccaactacgctaggaatttcagatagttctacaag 168  Q
    |||||||||||  ||||||||| || |||||| |||||    
T  31466656 agtccaactacaataggaattttaggtagttccacaag 31466693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 20504657 - 20504781
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||  |  ||||||    
T  20504657 cttaacctcttcagccatcagaatgtcttcctccttctcgaaggtccttgcagtccaactacactaggaattttaggtagttccacaagcattcaccata 20504756  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    |||||||||| ||  ||||||||||    
T  20504757 acctcttcaacacaggacatctccc 20504781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 27911935 - 27911790
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| |||||||| || ||||||||||||||||||||||| |||||| |||| |||||| |||||||||| || ||||||    
T  27911935 tccacaagtatacacct--taaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtctaactacactaggaattttaggtagttc 27911838  T
Q  163 tacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
     |||||  |  |||||||| ||||||| ||  ||||||||||| ||||    
T  27911837 cacaagcattcaccataacatcttcaacacaggacatctcccagttcc 27911790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 41586798 - 41586922
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||  |  ||||||    
T  41586798 cttaaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactaggaattttaggtagttccacaagcattcaccata 41586897  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  41586898 acatcttcaacacaggacatctccc 41586922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 18510189 - 18510314
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||| |||| || ||||||    
T  18510189 tccacaagtatacacct-taaaccccttcagccatcggaatgtcttccgccttctcgaaggtccttgcagtctaactacgctaggtattttaggtagttc 18510287  T
Q  163 tacaagactataccataacctcttcaa 189  Q
     |||||  |  |||||||| |||||||    
T  18510288 cacaagcattcaccataacatcttcaa 18510314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 20044459 - 20044335
Alignment:
Q  81 ttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||| | ||| || |||||| |||||  |  ||||||    
T  20044459 ttaacctcttcagccatcaaaatgtcttccgccttctcgaagagtccttgcagtccaactacactagaagttttaggtagttccacaagcattcaccata 20044360  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  20044359 acatcttcaacacaggacatctccc 20044335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 659508 - 659383
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||| |||||| ||| || |||||| ||||   |  |||||    
T  659508 cttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgtagtccaactacactaggagttttaggtagttccacaaacattcaccat 659409  T
Q  179 aacctcttcaatacgagacatctccc 204  Q
    ||| ||||||| ||  ||||||||||    
T  659408 aacatcttcaacacaggacatctccc 659383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 20044556 - 20044468
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaag 168  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||| | |||||||| || |||||| |||||    
T  20044556 cttaaccccttcagccatcggaatgacttccgccttctcgaaggtccttgcagtccaactacaccaggaattttaggtagttccacaag 20044468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 20044706 - 20044655
Alignment:
Q  23 cttgctgctctttcccttgcttcccactactccaagtagctccacaagttta 74  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20044706 cttgctgctctttcccttgcttcccactacaccaagtagctccacaagttta 20044655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 10756678 - 10756595
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  10756678 tccacaagtatacacctc--aaccacttcagccatcggaatatcttccgccttctcgaaggtccttgcagtccaactacactagga 10756595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 15355347 - 15355430
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  15355347 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactagga 15355430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 20504507 - 20504594
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgcc 113  Q
    ||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||  | ||||||||||| ||||| ||||| ||||||||    
T  20504507 ttgctactctctcccttgcttcgcactacgccaagtagctccacaagtttacac--cctaacctcttcaaccatcggaatgccttccgcc 20504594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 23666827 - 23666744
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  23666827 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacactagga 23666744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 6746841 - 6746773
Alignment:
Q  81 ttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    |||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||||||||||    
T  6746841 ttaacctcttcagccatcggaacgtcttccgtcttctcgaagagtccttgcagtccaactacgctagga 6746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 31544515 - 31544394
Alignment:
Q  66 acaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctac 165  Q
    |||||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||| | ||    
T  31544515 acaagtatacacctc--aaccacttcagccatcggaatatcttccgccttctcgaaggtccttgcagtccaactacactaggagttttaggtagtcccac 31544418  T
Q  166 aagactataccataacctcttcaa 189  Q
    |||  |  |||||||| |||||||    
T  31544417 aagctttcaccataacatcttcaa 31544394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 34477913 - 34478038
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    ||||||||| ||||||||  |||| ||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||| |||||| ||| || ||||     
T  34477913 tccacaagtatacacctc--aaccacttcagctatcagaatatcttccgccttctcgaagagtccttgcagtccaactacactaggagttttaggtagtc 34478010  T
Q  162 ctacaagactataccataacctcttcaa 189  Q
    | |||||  |  |||||||| |||||||    
T  34478011 ccacaagctttcaccataacatcttcaa 34478038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 31466701 - 31466770
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctagga 148  Q
    ||||||||||| ||||||| ||| |||||||| ||||||||||| |||||||||||||||||| ||||||    
T  31466701 cttaacctctttagccatcggaacgtcttccgtcttctcgaagagtccttgtagtccaactacactagga 31466770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 18468492 - 18468382
Alignment:
Q  81 ttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    |||||||||||||||||| |||  ||||||| ||||||||||| |||||| ||||||||||| |||||| ||| || |||| | |||||  |  ||||||    
T  18468492 ttaacctcttcagccatcggaacatcttccgtcttctcgaagagtccttgcagtccaactacactaggagttttaggtagtcccacaagcattcaccata 18468393  T
Q  180 acctcttcaat 190  Q
    || ||||||||    
T  18468392 acatcttcaat 18468382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 33310917 - 33310705
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  33310917 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 33310819  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  || |    
T  33310818 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagatatctcccgctttc 33310719  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  33310718 cttgaagatctact 33310705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 26066648 - 26066860
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  26066648 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacc-ctcaacctcttcagccatcggaatgtcttcc 26066746  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
     ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  || |    
T  26066747 tccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctctttaatacgagacatctcccgctttc 26066846  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  26066847 cttgaagatctact 26066860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 3396053 - 3395847
Alignment:
Q  16 caacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgcctt 115  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||   ||||||||||||||||| |||||||||| |||||    
T  3396053 caaccaccttgctgctctttcccttgcttcccactacaccaagtatctccacaagtttacaccc--taacctcttcagccatcggaatgtcttctgcctt 3395956  T
Q  116 ctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcccttga 215  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  3395955 ctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagactataccataacctcttcaatacgagacatctcccgctttccttga 3395856  T
Q  216 agatctact 224  Q
    |||||||||    
T  3395855 agatctact 3395847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 3630461 - 3630668
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    ||||||||  |||| |||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||||||| ||||||| |||||||||||||    
T  3630461 catcaaccaacttgttgctctttcccttg-ttcccactacaccaagtagctccacaagtttacaccc--taacctctttagccatcggaatgtcttccgc 3630557  T
Q  113 cttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttccct 212  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||  || |||    
T  3630558 cttctcaaagatccttgtagttcaactacactaggaatttcaggtagttctacaagactataacataacatcttcaatacgtgacatctcccgctt-cct 3630656  T
Q  213 tgaagatctact 224  Q
    ||||||||||||    
T  3630657 tgaagatctact 3630668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 30729401 - 30729536
Alignment:
Q  24 ttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaaga 123  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |  ||||| ||||||||||| |||||||||||||||||||||||     
T  30729401 ttgctgctctttcccttgcttcctactacaccaaatagctccacaagtttacactt--taaccccttcagccatcggaatgtcttccgccttctcgaagg 30729498  T
Q  124 tccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    |||||| ||||||||||| |||||||||| || |||||    
T  30729499 tccttgcagtccaactacactaggaattttaggtagtt 30729536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 15533279 - 15533411
Alignment:
Q  28 tgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatcct 127  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  15533279 tgctctttcccttgcttcccactacaccaagtagctccacaaatttacacccg--aaccccttcagccatcagaatgtcttccgccttctcgaaggtcct 15533376  T
Q  128 tgtagtccaactacgctaggaatttcagatagttc 162  Q
    || ||||||||||| || ||||||| || ||||||    
T  15533377 tgcagtccaactacacttggaattttaggtagttc 15533411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 26944876 - 26944711
Alignment:
Q  22 ccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaa 121  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||| ||||  |||| |  ||||| |||||||||||  |||| |||||||||| |||||    
T  26944876 ccttcctgctctttcccttgcttcccactacaccatgtagctccataagtacacacat--taaccccttcagccatcgaaatgccttccgccttttcgaa 26944779  T
Q  122 gatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaa 189  Q
    | |||||| |||||||||| ||||||||||| || |||||| |||||  |  ||||||||||||||||    
T  26944778 ggtccttgcagtccaactatgctaggaattttaggtagttccacaagtatccaccataacctcttcaa 26944711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 3630715 - 3630824
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| ||  |||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||||| |||||  |  ||||||    
T  3630715 cttaaccccttcagccctcgaaatgtcttccgccttctcgaaggtccttgcagtccaactacgctaggaattttaggtagttccacaagcattcaccata 3630814  T
Q  180 acctcttcaa 189  Q
    || |||||||    
T  3630815 acatcttcaa 3630824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 3395815 - 3395676
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||| |||||||  ||||| |||||||| || ||||||||||||||||||||||| |||||| |||||||||||  ||||||||| || ||||||    
T  3395815 tccacaagtatacacct--taaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgcagtccaactacaataggaattttaggtagttc 3395718  T
Q  163 tacaagactataccataacctcttcaatacgagacatctccc 204  Q
     ||||   |  |||||||| ||||||| ||  ||||||||||    
T  3395717 cacaaacattcaccataacatcttcaacacaggacatctccc 3395676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 15533425 - 15533550
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    |||||||||||||||| || ||| |||||||||||||||||||| |||||| ||||||||||| |||||| ||| || |||||| |||||  |  |||||    
T  15533425 cttaacctcttcagccctcggaacgtcttccgccttctcgaagagtccttgcagtccaactacactaggagttttaggtagttccacaagcattcaccat 15533524  T
Q  179 aacctcttcaatacgagacatctccc 204  Q
     || ||||||| || |||||||||||    
T  15533525 gacatcttcaacacaagacatctccc 15533550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 26066892 - 26066975
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| ||||||||||| |||||||||||| |||||||||| |||||| ||||||||||| ||||||    
T  26066892 tccacaagtatacacctc--aaccccttcagccatcggaatgtcttccgtcttctcgaaggtccttgcagtccaactacactagga 26066975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 33310673 - 33310590
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || |||| |||||||||||||||||| |||||| ||||||||||| ||||||    
T  33310673 tccacaagtatacacctc--aaccccttcagccctcggaatatcttccgccttctcgaaggtccttgcagtccaactacactagga 33310590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 11137892 - 11137784
Alignment:
Q  83 aacctcttcagccatcagaatgtcttccgccttctcgaag---atccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    |||||||||| ||||| ||||| |||||||||||  ||||   ||||||| | ||||||||| |||||||||| || |||||| ||||| ||| ||||||    
T  11137892 aacctcttcaaccatcggaatgccttccgccttcatgaagaccatccttgca-tccaactacactaggaattttaggtagttccacaagtctacaccata 11137794  T
Q  180 acctcttcaa 189  Q
    ||| ||||||    
T  11137793 accacttcaa 11137784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 24153 - 23940
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||    
T  24153 atcatcaacctccttgctgctcaaacccttgcttcccactactccaagtagctccacaagtttacacca-tcaacctcttcagccatcggaatgtcttcc 24055  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagac-tataccataacctcttcaatacgagacatctcccatttc 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||     
T  24054 gccttctcgaagatgcttgtagtccaactacgctaggaatttcaggtagttctacaagacttataccataacctcttcaatacgagacatctcccgcttt 23955  T
Q  210 ccttgaagatctact 224  Q
    |||||||||||||||    
T  23954 ccttgaagatctact 23940  T

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Target: scaffold0140; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 23908 - 23825
Alignment:
Q  63 tccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctagga 148  Q
    ||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  23908 tccacaagtatacacctc--aaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgtagtccaactacactagga 23825  T

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Target: scaffold0250 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 2592 - 2391
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  2592 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccat------------a 2505  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttcaatacgagacatctcccatttcc 210  Q
    |||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  2504 gccttctcaaagatgcttgtagtccaactacgctaggaatttcaagtagttctacaagactataccataacctcttcaatacgagacatctcccgctttc 2405  T
Q  211 cttgaagatctact 224  Q
    ||||||||||||||    
T  2404 cttgaagatctact 2391  T

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Target: scaffold0025 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 69870 - 70048
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||    
T  69870 atcatcaaccaccttgctgatctttcccttgcttcccactacaccaagtagctccacaagtttacacctcataaccccttcagccctcggaatgtcttcc 69969  T
Q  111 gccttctcgaa-gatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    ||||||||||| | |||||| ||||||||||| |||||||||| || ||| || |||||  |  ||| |||||||||||    
T  69970 gccttctcgaaaggtccttgcagtccaactacactaggaattttaggtagctccacaagcattcaccttaacctcttca 70048  T

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Target: scaffold0025; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 70036 - 70161
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaatttcagatagttctacaagactataccat 178  Q
    ||||||||||||||||||| ||  |||||||| ||||||||||| | |||| |||||||||||||||||||||| || |||| | |||||  |  |||||    
T  70036 cttaacctcttcagccatcggagcgtcttccgtcttctcgaagagtacttgcagtccaactacgctaggaattttaggtagtcccacaagcattcaccat 70135  T
Q  179 aacctcttcaatacgagacatctccc 204  Q
    ||| |||||||| |  ||||||||||    
T  70136 aacatcttcaatgcaggacatctccc 70161  T

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Target: scaffold1674 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 131 - 308
Alignment:
Q  11 atcatcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttcc 110  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||| |||||||||||||| | ||||| |||||||| || |||||||||||    
T  131 atcatcaacctccttaatgctctttcccttgcttcccactacaccaagtagcttcacaagtttacaccccataaccccttcagccctcggaatgtcttcc 230  T
Q  111 gccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccataacctcttca 188  Q
    |||||||||||| |||||||||||||||||| |||||| ||| || |||| | |||||  |  ||| |||||||||||    
T  231 gccttctcgaaggtccttgtagtccaactacactaggagttttaggtagtcccacaagcattcaccttaacctcttca 308  T

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Target: scaffold1674; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 296 - 369
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaaga-tccttgtagtccaactacgctaggaattt 152  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  296 cttaacctcttcagccatcggaacgtcttccgacttctcgaagagtccttgcagtccaactacgctaggaattt 369  T

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Target: scaffold0011 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 35383 - 35253
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| |||| || |||||| |||||  |  ||||||    
T  35383 cttaaccccttcagccctcggaatgtcttccgccttctcgaaggtccttgtagtctaactacgctaggtattttaggtagttccacaagcattcaccata 35284  T
Q  180 acctcttcaatacgagacatctcccatttcc 210  Q
    |||||||||| ||  |||||||||| |||||    
T  35283 acctcttcaacacaggacatctcccgtttcc 35253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 35542 - 35429
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||   ||||||||||| |||||  |||| |||||||    
T  35542 catcaaccaccttgctgctctttcccttg-ttcctactacaccaagtagctccacaagtttacacc---taacctcttcaaccatcgaaatgccttccgc 35447  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | ||||||||||||    
T  35446 ccttttgaagatccttgt 35429  T

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Target: scaffold0006 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 189278 - 189200
Alignment:
Q  147 gaatttcagatagttctacaagact-ataccataacctcttcaatacgagacatctcccatttcccttgaagatctact 224  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||    
T  189278 gaatttcaggtagttctacaagacttataccataacctcttcaatacgagacatctcccgctttccttgaagatctact 189200  T

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Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 51667 - 51552
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| ||  ||||||||||||||||||||||||||| |||||||| | |||||||||||||  | ||||||||||| ||||| |||||||||||||    
T  51667 catcaaccaccaagctgctctttcccttgcttcccactacaccaagtagtttcacaagtttacac--cctaacctcttcaaccatcggaatgtcttccgc 51570  T
Q  113 cttctcgaagatccttgt 130  Q
    | | | | ||||||||||    
T  51569 ccttttgtagatccttgt 51552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 51506 - 51382
Alignment:
Q  80 cttaacctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttctacaagactataccata 179  Q
    ||||||| |||||| | || ||||||||||||||||||||||| |||||| |||||| |||| |||||||||| || |||||| |||||  |  ||||||    
T  51506 cttaaccccttcagacctcggaatgtcttccgccttctcgaaggtccttgcagtccatctacactaggaattttaggtagttccacaagcattcaccata 51407  T
Q  180 acctcttcaatacgagacatctccc 204  Q
    || ||||||| ||  ||||||||||    
T  51406 acatcttcaacacaggacatctccc 51382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 4271 - 4195
Alignment:
Q  86 ctcttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagttc 162  Q
    ||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||| |||| ||||| || ||||||    
T  4271 ctcttcagccaacggaatgtcttccgccttctcgaagagccttgcagtccaactacactagaaattttaggtagttc 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 4365 - 4292
Alignment:
Q  88 cttcagccatcagaatgtcttccgccttctcgaagatccttgtagtccaactacgctaggaatttcagatagtt 161  Q
    |||||||||||| ||||| ||||| |||||||||| |||||| ||||||||||| |||||||||| || |||||    
T  4365 cttcagccatcataatgttttccgacttctcgaaggtccttgcagtccaactacactaggaatttgaggtagtt 4292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 4512 - 4387
Alignment:
Q  13 catcaacctccttgctgctctttcccttgcttcccactactccaagtagctccacaagtttacacctcttaacctcttcagccatcagaatgtcttccgc 112  Q
    |||||||| || || | ||||||||||||||||||| ||| ||| |||||||||||| ||||||||   |||| |||| | ||||| ||||| |||||||    
T  4512 catcaaccaccatgtttctctttcccttgcttcccagtacaccatgtagctccacaa-tttacacc---taacttcttaaaccatcggaatgccttccgc 4417  T
Q  113 cttctcgaagatccttgtagtccaactacgc 143  Q
    ||| | |||||| |||||| |||||||||||    
T  4416 ctttttgaagattcttgta-tccaactacgc 4387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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