View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17879_low_3 (Length: 375)
Name: NF17879_low_3
Description: NF17879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17879_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 359
Target Start/End: Complemental strand, 54504733 - 54504376
Alignment:
| Q |
4 |
ctgcaatggcgcttttttccacttatggaatgagatattcctgttttctgaagcaccaccattgtattgccgtcttcgtggtctacatgctctcctctta |
103 |
Q |
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| T |
54504733 |
ctgcaatgacgcttttttccacttatgaaatgatgtattcctgttttcttaagcaccaccattgtattgccgtcgtagtggtctacatgctctcctctta |
54504634 |
T |
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| Q |
104 |
ttctacatctatcatagtcttcctcttccacttcgtgtaccgattctgttttgttattgtactgaaacgctgtacaatatatat------gcatcaatat |
197 |
Q |
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| T |
54504633 |
ttccacatctatcatagtcttcctcttccacttcgtgtaccgattctgttttgttattgtactgaaatgctgtacaatatatatatatatgcatcaatat |
54504534 |
T |
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| Q |
198 |
ggagtatatattatcaaatttattttacgtatactatggagccacaattaatatatcaacatttgtttacacgatatatatatgcaagaaaattatgttg |
297 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54504533 |
ggagtat----tatcaaatttattttacgtatactatggagccacaattaatatatcaacatttgtttacacgatatatatatgcaagaaaattatattg |
54504438 |
T |
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| Q |
298 |
aagataaggaaattaagaagggtgttactattacttactgatagtgtcaccgactatgaatt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54504437 |
aagataaggaaattaagaagggtgttactattacttactgatagtgtcaccgactatgaatt |
54504376 |
T |
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