View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17879_low_4 (Length: 347)
Name: NF17879_low_4
Description: NF17879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17879_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 28471488 - 28471803
Alignment:
| Q |
14 |
aatattaacataaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggc |
113 |
Q |
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| T |
28471488 |
aatattaacataaactaaattcttcttacttgaagaaacatccttaaacttaggcaaataagtggttttttcctggtatggtgtttccttcgctagcggc |
28471587 |
T |
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| Q |
114 |
ggctctattagattcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcag |
213 |
Q |
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| T |
28471588 |
ggctctattagattcatgaattgcttagcaaagttaacacttttacaatcttctggaagaacttgatgatagaacaaagagcttctgttttcactttcag |
28471687 |
T |
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| Q |
214 |
tttcagattttgattctgattttttcttgaaaacaacgaggccatgattattgacaagactaacatgaacaatagatgaatttcgcagcaacgctgaaat |
313 |
Q |
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| T |
28471688 |
tttcagattttgattctgattttttcttgaaaacaacgaggccatgattattgacaagactaacatgaacaatagatgaatttcgcagcaacgctgaaat |
28471787 |
T |
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| Q |
314 |
cggtgaagcatatctt |
329 |
Q |
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| T |
28471788 |
cggtgaagcatatctt |
28471803 |
T |
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