View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_14 (Length: 473)
Name: NF1787_high_14
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 2215497 - 2215051
Alignment:
| Q |
10 |
ataatactcctattggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215497 |
ataatactcctattggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaat |
2215398 |
T |
|
| Q |
110 |
caaaactctgactttcaccctgtagcaagtattaaaagtcaaattaggaatggaaaccacaatatgtttatagaagtagcaaaagagacattaatttctg |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215397 |
caaaactctgactttcaccctgtggcaagtattaaaagtcaaattaggaatggaaaccacaatatgtttatagaagtagcaaaagagacattaatttctg |
2215298 |
T |
|
| Q |
210 |
ctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaaacaatacattagtttcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2215297 |
ctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaaacaatgcattagtttcc |
2215198 |
T |
|
| Q |
310 |
attgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacattccgctattacttagact |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215197 |
attgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacattccgctattacttagact |
2215098 |
T |
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| Q |
410 |
aactgctggtggaccaagatagggatacaactcaaccaactatttat |
456 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
2215097 |
aactgccggtggaccaagatagtgatacaactcaaccaactatttat |
2215051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 2202900 - 2202461
Alignment:
| Q |
10 |
ataatactcctattggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaat |
109 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2202900 |
ataatactctcattggatatcaatacccccttggggtcaccagtagttccgctagtatacattattgtacagatatcgcttcttttctttacaggtaaat |
2202801 |
T |
|
| Q |
110 |
caaaactctgactttcaccctgtagcaagtattaaaagtcaaattaggaatggaaaccacaatatgtttatagaagtagcaaaagagacattaatttctg |
209 |
Q |
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||||||| ||||||| ||||||| ||||||||||||| |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
2202800 |
caaaactatgacttttaccctgtggcaagtattaaaaatcaaataaggaatagaaaccacaatatgtctacagaagtagcaaaagagacattaatttctg |
2202701 |
T |
|
| Q |
210 |
ctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaaacaatacattagtttcc |
309 |
Q |
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| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||| ||| ||||||| |
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| T |
2202700 |
caagccatacttgtaatgaggtttagaaaaataacttttaatgcatatgtatctataaaaattgacccaagtcaactaaccaatcaatgcataagtttcc |
2202601 |
T |
|
| Q |
310 |
attgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacattccgctattacttagact |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||| || |
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| T |
2202600 |
attgacctgatatcatccttatttttcttacttgaattgc-------ataacaagtatgttaacttatttctttccacacattccactagtacttaggct |
2202508 |
T |
|
| Q |
410 |
aactgctggtggaccaagatagggatacaactcaaccaactatttat |
456 |
Q |
| |
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|||||| | ||||| |||||| |||||||||||||||||||||||| |
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|
| T |
2202507 |
aactgccagaggaccgagatagtgatacaactcaaccaactatttat |
2202461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 41931345 - 41931437
Alignment:
| Q |
22 |
ttggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaatcaaaa |
114 |
Q |
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||||||||||||||||||||||| ||||| || ||||| || || |||||||||||||| || |||||| | || |||||||| | ||||||| |
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| T |
41931345 |
ttggatatcaatactcccttgggatcaccggttgttccacttgtgtacattattgtacatatgtcgcttttcttttttacaggaagatcaaaa |
41931437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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