View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1787_high_23 (Length: 411)
Name: NF1787_high_23
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 26515928 - 26516292
Alignment:
| Q |
16 |
atgaaatatacttttgtaaaatatacttaaaatttctcttttttagttagaaatttaacgaagttttttacttcttaaaatgacataatttagaatgnnn |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26515928 |
atgaaatagacttttgtaaaatatacttaaaatttctcttttttagttaaaaatttaacgaagttttttacttcttaaaatgacataatttagaatgaaa |
26516027 |
T |
|
| Q |
116 |
nnnnnnctgatttcttatatgattgtctttgaagtcactcataatcacttatactgtgacattacatggaggtgtgtgtctcttaattttannnnnnnna |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26516028 |
aaaatactgatttcttatatgattgtctttgaagtcactcataatcacttatactgtgacataacatggaggtgtgtgtctcttaattttattttatttt |
26516127 |
T |
|
| Q |
216 |
tnnnnnnnnnngtcaaatatttttaatgatttaatgattattattgattggcaatttggcattgtaaaatataattacacgacaatgtatgttatataaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26516128 |
atgaaaaaaaagtcaaatatttttaatgatttaatgattattattgattggcaatttggcattgtaaaatataattacacgacaatgtatgttatataaa |
26516227 |
T |
|
| Q |
316 |
gataaattaaacccttatacaaaataaatgttacataaaaacttcaatagaggatcactgctctt |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26516228 |
gataaattaaacccttatacaaaataaatgttacataaaaacttcaatagaggatcactgctctt |
26516292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University