View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1787_high_28 (Length: 378)
Name: NF1787_high_28
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 158 - 361
Target Start/End: Complemental strand, 39754607 - 39754404
Alignment:
| Q |
158 |
cacaatagattatattttgtacttttaccctcccattaacaaggaatatgattcatttgtactttgtagggtggagttcctttctaagtcatcagatttt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39754607 |
cacaatagattatattttgtacttttaccctcccattaacaaggaatatgattcatttgtactttgtagggtggagttcctttctaagtcatcagatttt |
39754508 |
T |
|
| Q |
258 |
atttaggtttaggggctgtttgctttattaggggaattgatcccctctatatatttcttcctcaatctcaacccttggtttttcactctctctatttcat |
357 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39754507 |
atttaggtttaggggctgtttgctctattaggggaattgatcccctctatatatttcttcctcaatctcaacccttggtttttcactctctctatttcat |
39754408 |
T |
|
| Q |
358 |
tata |
361 |
Q |
| |
|
|||| |
|
|
| T |
39754407 |
tata |
39754404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 39754742 - 39754674
Alignment:
| Q |
23 |
cagagatcacatagaaggcaagtgttcaccaattggattatacaaaaaggaatgataggtaatatattg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39754742 |
cagagatcacatagaaggcaagtgttcaccaattggattatacaaaaaggaatgataggtaatatattg |
39754674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University