View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_high_31 (Length: 355)

Name: NF1787_high_31
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_high_31
NF1787_high_31
[»] chr2 (1 HSPs)
chr2 (1-331)||(17442850-17443173)
[»] chr6 (7 HSPs)
chr6 (136-333)||(33260386-33260584)
chr6 (130-334)||(33282676-33282881)
chr6 (130-322)||(33386137-33386330)
chr6 (55-98)||(33397304-33397347)
chr6 (146-240)||(2732931-2733025)
chr6 (149-211)||(9194433-9194495)
chr6 (63-99)||(33416842-33416878)
[»] scaffold0428 (2 HSPs)
scaffold0428 (130-333)||(11372-11576)
scaffold0428 (136-334)||(4442-4641)
[»] chr4 (2 HSPs)
chr4 (152-212)||(26275540-26275600)
chr4 (149-202)||(20709966-20710019)
[»] chr1 (1 HSPs)
chr1 (150-230)||(7347692-7347772)
[»] scaffold0085 (1 HSPs)
scaffold0085 (150-211)||(50807-50868)
[»] chr7 (3 HSPs)
chr7 (146-219)||(6894304-6894377)
chr7 (129-173)||(7982379-7982423)
chr7 (132-211)||(30900113-30900193)
[»] chr5 (1 HSPs)
chr5 (146-174)||(9130954-9130982)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 17443173 - 17442850
Alignment:
Q  1 atgaaagtggtgtaatatcatggaatgtggaacaacaattcaaatagacaacatttcagaaaacttgctatcaatttcaattcattaaccaaaattcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443173 atgaaagtggtgtaatatcatggaatgtggaacaacaattcaaatagacaacatttcagaaaacttgctatcaatttcaattcattaaccaaaattcaaa 17443074  T
Q  101 ccagtcttgttaaatagcagccctatagactatagtgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatg 200  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443073 ccagtcttgttaaatagcagccctatag-------tgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatg 17442981  T
Q  201 ttgtgaaatagcatctattgtggcgctataaaactattgtgtgaaggaacaaacagttactttcggggatacatgattgacaacactgattcaaacaagc 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  17442980 ttgtgaaatagcatctatagtggcgctataaaactattgtgtgaaggaacaaacagttactttcagggatacatgattgacaacactgattcaaacaaga 17442881  T
Q  301 aagcaggatcagaaaatgaattaagcataac 331  Q
    |||||||||  ||||||||||||||||||||    
T  17442880 aagcaggattggaaaatgaattaagcataac 17442850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 136 - 333
Target Start/End: Original strand, 33260386 - 33260584
Alignment:
Q  136 tgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctataaaact 235  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  33260386 tgctacagcgagtggaatatgaacaaattgctattgttcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggtgctataaaact 33260485  T
Q  236 attgtgt-gaaggaacaaacagttactttcggggatacatgattgacaacactgattcaaacaagcaagcaggatcagaaaatgaattaagcataacct 333  Q
    ||||||| |  | || |||  ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  33260486 attgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacct 33260584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 130 - 334
Target Start/End: Original strand, 33282676 - 33282881
Alignment:
Q  130 ctatagtgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctat 229  Q
    ||||| ||||| ||| |||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  33282676 ctatattgctacagcgagtggactatgaacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggcgctat 33282775  T
Q  230 aaaactattgtgt-gaaggaacaaacagttactttcggggatacatgattgacaacactgattcaaacaagcaagcaggatcagaaaatgaattaagcat 328  Q
    ||||||||||||| |  | || |||  ||||||||| | |||||| |||||||||||||||||||| ||||||||||||||  ||||||| |||||||||    
T  33282776 aaaactattgtgtagcggtaagaaattgttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcat 33282875  T
Q  329 aaccta 334  Q
    ||||||    
T  33282876 aaccta 33282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 33386137 - 33386330
Alignment:
Q  130 ctatagtgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctat 229  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||| ||||||||||    
T  33386137 ctatagtgctatagagagtggaatttgaacaaattgctattgttcaaaattacgatatttggttcaaaatgttgtgaaatagcctctatagtggcgctat 33386236  T
Q  230 aaaactattgtgt-gaaggaacaaacagttactttcggggatacatgattgacaacactgattcaaacaagcaagcaggatcagaaaatgaatt 322  Q
    ||||||||||||| |  | ||||||  ||||||||||| |||||| || |||||||||| |||||  |||||||||| |||   ||||||||||    
T  33386237 aaaactattgtgtagcggtaacaaattgttactttcggcgatacaagaatgacaacactaattcagtcaagcaagcatgatttaaaaatgaatt 33386330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 33397304 - 33397347
Alignment:
Q  55 ttcagaaaacttgctatcaatttcaattcattaaccaaaattca 98  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  33397304 ttcagaaaacatgcaatcaatttcaattcattaaccaaaattca 33397347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 2732931 - 2733025
Alignment:
Q  146 agtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctataaaactattgt 240  Q
    |||| ||||||||||||| |||||||||  |   || | |||||||| ||||||||||| |||||||| |||| | |||||||||| ||||||||    
T  2732931 agtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctatagaggcgctataatactattgt 2733025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 9194495 - 9194433
Alignment:
Q  149 ggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatag 211  Q
    |||||| ||||||||||||||||||| |   |||| |||||||| ||||||||||| ||||||    
T  9194495 ggaattggaacaaattgctattgttctgctatacggtatttagtacaaaatgttgtcaaatag 9194433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 33416842 - 33416878
Alignment:
Q  63 acttgctatcaatttcaattcattaaccaaaattcaa 99  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  33416842 actttctatcaatttcaattcaataaccaaaattcaa 33416878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 130 - 333
Target Start/End: Complemental strand, 11576 - 11372
Alignment:
Q  130 ctatagtgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctat 229  Q
    ||||| ||||| ||| |||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  11576 ctatattgctacagcgagtggactatgaacaaattgctattattcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggcgctat 11477  T
Q  230 aaaactattgtgt-gaaggaacaaacagttactttcggggatacatgattgacaacactgattcaaacaagcaagcaggatcagaaaatgaattaagcat 328  Q
    ||||||||||||| |  | || |||  ||||||||| | |||||| |||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  11476 aaaactattgtgtagcggtaagaaattgttactttcagcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcat 11377  T
Q  329 aacct 333  Q
    |||||    
T  11376 aacct 11372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 136 - 334
Target Start/End: Original strand, 4442 - 4641
Alignment:
Q  136 tgctatagcaagtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctataaaact 235  Q
    ||||| ||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  4442 tgctacagcgagtggaatatgaacaaattgctattgctcagaattacgatagttagtgcaaaatgttgtgaaatagcatctatagtggtgctataaaact 4541  T
Q  236 attgtgt-gaaggaacaaacagttactttcggggatacatgattgacaacactgattcaaacaagcaagcaggatcagaaaatgaattaagcataaccta 334  Q
    ||||||| |  | || |||  ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||    
T  4542 attgtgtagcggtaagaaattgttactttcggcgatacacgattgacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataaccta 4641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 26275600 - 26275540
Alignment:
Q  152 atttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagc 212  Q
    |||||||||||| ||||||||||  || |||| |||||||| |||||| ||||||||||||    
T  26275600 atttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagc 26275540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 20710019 - 20709966
Alignment:
Q  149 ggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgtt 202  Q
    ||||||||||||||| |||||||||| | | |||| ||||||||||||| ||||    
T  20710019 ggaatttgaacaaatcgctattgttctgcaatacgctatttagtgcaaagtgtt 20709966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 7347692 - 7347772
Alignment:
Q  150 gaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctattgtggcgctata 230  Q
    ||||||||||||||||||||||||  | | |||  |||||||| |||||| ||||||||||||  |||| | |||||||||    
T  7347692 gaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggctatagaggcgctata 7347772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 50807 - 50868
Alignment:
Q  150 gaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatag 211  Q
    ||||||||||||||||| ||||||| ||| |||  |||||||| ||| || |||||||||||    
T  50807 gaatttgaacaaattgcaattgttccgaaatacactatttagttcaagatattgtgaaatag 50868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 6894377 - 6894304
Alignment:
Q  146 agtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatagcatctatt 219  Q
    |||||||||||||||||||||||||||| |  | |||  |||| ||| ||||||||||| ||||| || |||||    
T  6894377 agtggaatttgaacaaattgctattgtttaacaatacactattaagtacaaaatgttgtcaaataacagctatt 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 7982423 - 7982379
Alignment:
Q  129 actatagtgctatagca-agtggaatttgaacaaattgctattgtt 173  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||    
T  7982423 actatagt-ctatagcatagtggaatttgaacaaattgctattgtt 7982379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 30900193 - 30900113
Alignment:
Q  132 atagtgctatagca-agtggaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatag 211  Q
    |||||||||| ||| || ||||||||||| ||| ||||||||||||   |||  |||||||| |||||| |||||||||||    
T  30900193 atagtgctattgcatagcggaatttgaacgaatcgctattgttcagcgatacactatttagtacaaaatattgtgaaatag 30900113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 9130954 - 9130982
Alignment:
Q  146 agtggaatttgaacaaattgctattgttc 174  Q
    |||||||||||||||||||||||||||||    
T  9130954 agtggaatttgaacaaattgctattgttc 9130982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University