View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_32 (Length: 354)
Name: NF1787_high_32
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 11055034 - 11054712
Alignment:
| Q |
13 |
aatatctaatcaaatcaacgaagcaccatagtaaaagctactgctagtaacaaaaaactttctccttcttagaacaattaggataggattggttttatct |
112 |
Q |
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| T |
11055034 |
aatatctaatcaaatcaacgaagcaccatagtaaaagctactgctagtaacaaaaaactttctccttcttagaacaattaggataggattggttttatct |
11054935 |
T |
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| Q |
113 |
tattgtttgtattttttagttgggcaaaatatggtaattcatagtcaacaaattttgcagtcaatattcattttttgtttcagtcaaaatctgtttttcc |
212 |
Q |
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| T |
11054934 |
tattgtttgtattttttagttgggcaaaatatggtgattcatagtcaacaaattttgcagtcaatattcattttttgtttcagtcaaaatctgtttttcc |
11054835 |
T |
|
| Q |
213 |
ttatgtttcttagtcagtcttcgnnnnnnnctctgtcttatgtttctattcgttttttccaatcctgtcccaaaattggtcatttgaatagaaacttcct |
312 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11054834 |
ttatgtttcttagtcagtcttcgtttttttctttgtcttatgtttctattcgttttttccaatcctgtcccaaaattggtcatttgaatagaaacttcct |
11054735 |
T |
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| Q |
313 |
agaatgcagtccaaaagcatacc |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
11054734 |
agaatgcagtccaaaagcatacc |
11054712 |
T |
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