View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_high_35 (Length: 334)

Name: NF1787_high_35
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_high_35
NF1787_high_35
[»] scaffold0002 (2 HSPs)
scaffold0002 (13-194)||(464885-465066)
scaffold0002 (254-334)||(464745-464825)
[»] chr5 (2 HSPs)
chr5 (13-194)||(35897854-35898035)
chr5 (254-334)||(35898095-35898175)
[»] chr3 (4 HSPs)
chr3 (13-194)||(52054294-52054475)
chr3 (13-194)||(53573904-53574085)
chr3 (254-334)||(53573764-53573844)
chr3 (254-334)||(52054154-52054234)
[»] chr1 (4 HSPs)
chr1 (13-194)||(31355392-31355573)
chr1 (13-194)||(16992679-16992860)
chr1 (254-334)||(16992920-16993000)
chr1 (254-334)||(31355634-31355714)
[»] chr2 (2 HSPs)
chr2 (13-194)||(30199049-30199230)
chr2 (254-334)||(30198909-30198989)


Alignment Details
Target: scaffold0002 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 465066 - 464885
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  465066 aatattaaagagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 464967  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  464966 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 464885  T

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Target: scaffold0002; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 464825 - 464745
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  464825 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgctccacaaag 464745  T

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Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 35897854 - 35898035
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35897854 aatattaaagagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 35897953  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35897954 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 35898035  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 35898095 - 35898175
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  35898095 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgctccacaaag 35898175  T

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Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 52054475 - 52054294
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52054475 aatattaaagagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 52054376  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52054375 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 52054294  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 53574085 - 53573904
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53574085 aatattaaaaagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 53573986  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53573985 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 53573904  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 53573844 - 53573764
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  53573844 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgctccacaaag 53573764  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 52054234 - 52054154
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  52054234 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgttccacaaag 52054154  T

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Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 31355392 - 31355573
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31355392 aatattaaagagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 31355491  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31355492 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 31355573  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 16992679 - 16992860
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16992679 aatattaaagagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 16992778  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16992779 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctttggtattattaatata 16992860  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 16992920 - 16993000
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  16992920 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgctccacaaag 16993000  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 31355634 - 31355714
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  31355634 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgctccacaaag 31355714  T

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Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 30199230 - 30199049
Alignment:
Q  13 aatattaaagagatatcaattactaatgatggtgcaacacaagtaaaggggtttaagaacaacaaaggtccaaagggttcaaaacgttggaaaggttggg 112  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30199230 aatattaaaaagatatcaattactaatgattgtgcaacacaagtaaaggggtttaagaacaacgaaggtccaaagggttcaaaacgttggaaaggttggg 30199131  T
Q  113 tagaaacaaaattggccaagagaaagaaatgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 194  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30199130 tagaaacaaaactggccaagagaaagaaacgtgcgaagtccattgcttcacaaattcaagaacctatggtattattaatata 30199049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 30198989 - 30198909
Alignment:
Q  254 cgtgtagaagaacaaaggtaagcaaggttccaaaaatataaagaggcgggatgaagtggcaaacacaagtgctccacaaag 334  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  30198989 cgtgtagaagaacaaaggtaagcagggttccaaaaatataaagaggcgggatgaagtgtcaaacataagtgctccacaaag 30198909  T

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