View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_37 (Length: 319)
Name: NF1787_high_37
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 52760732 - 52761026
Alignment:
| Q |
9 |
agcagagactaaactagagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760732 |
agcagagactaaactagagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaa |
52760831 |
T |
|
| Q |
109 |
acaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctggagcatgcg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760832 |
acaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctggagcatgcg |
52760931 |
T |
|
| Q |
209 |
ttttagtaacacttggcgccgaagcatgagcggtgctggtttcacttggtgccggagcatgggtgctggtagcgcttggtgcaggagcatggttg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760932 |
ttttagtaacacttggcgccgaagcatgagcggtgctggtttcacttggtgccggagcatgggtgctggtagcgcttggtgcaggagcatggttg |
52761026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 52796987 - 52796883
Alignment:
| Q |
101 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
200 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||| ||| |||||| | ||||||| ||||||||||| ||| ||| ||||||||||| || |
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| T |
52796987 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggacttggtgaagg |
52796888 |
T |
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| Q |
201 |
agcat |
205 |
Q |
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||||| |
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| T |
52796887 |
agcat |
52796883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 52798882 - 52798774
Alignment:
| Q |
96 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggt |
195 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||| | | |||| || |||||||||| || | |||||| ||||| | |||||| || |
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| T |
52798882 |
aacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatgtttaggactaggc |
52798783 |
T |
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| Q |
196 |
gctggagca |
204 |
Q |
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|| |||||| |
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| T |
52798782 |
gccggagca |
52798774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 38710644 - 38710731
Alignment:
| Q |
96 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatga |
183 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||| |||||| |||||| |
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| T |
38710644 |
aacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
38710731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 42094276 - 42094344
Alignment:
| Q |
96 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaa |
164 |
Q |
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||||||||||||| ||| ||||||||| ||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
42094276 |
aacattctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaa |
42094344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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