View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1787_high_39 (Length: 307)
Name: NF1787_high_39
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 38 - 293
Target Start/End: Complemental strand, 40568988 - 40568738
Alignment:
| Q |
38 |
taattgcattcatcaattttaatattgaattcgaaattgacaatgttttcaatattgaattacaatcacaattcatgaactaaataagactacatacatt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40568988 |
taattgcattcatcaattttaatattgaattcgaaattgacaatgttttcaatattgaattacaatcacaattcttgaactaaataagactacatacatt |
40568889 |
T |
|
| Q |
138 |
atgaagaggtgttgtgtttccacgaccatcttaacactctcttcatccaaactctcgtcattcttctgatgtcctggctacttaacatttttggctagtt |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
40568888 |
atgaagaggtgtt-----tccacgaccatcttaacactctcctcatccaaactctcgtcattcttctgatgccatggctacttaacatttttggctagtt |
40568794 |
T |
|
| Q |
238 |
atcacatgtcccatgttagtgtatgtctctacttgtggcttataatttgtaccgtt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568793 |
atcacatgtcccatgttagtgtatgtctctacttgtggcttataatttgtaccgtt |
40568738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University