View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_41 (Length: 301)
Name: NF1787_high_41
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 38829885 - 38829620
Alignment:
| Q |
25 |
tccccataattcctcatgtcgtttgcaactgtcattactcgactaaaataatcagtgatcgattcaccctgcttcattgctaagacctcaaagtctcggc |
124 |
Q |
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| T |
38829885 |
tccccataattcctcatgtcgtttgcaaccgtcattactcgaccaaaataatcagtgattgattcaccctgcttcattgctaagacctcaaagtctcggc |
38829786 |
T |
|
| Q |
125 |
gtagacgattaagctgtgctctcttcactcgagcattgccgcgacacttcaacttcatggaatcccatagctgtttagatgtctccttctgcgtgatggt |
224 |
Q |
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||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |
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| T |
38829785 |
gtagatgattgagttgtgctctcttcactcgagcattgtcgcgacacttcaacttcatggaatcccatagccgtttagatgtctccttctgcgtgttcgt |
38829686 |
T |
|
| Q |
225 |
cttcagaattgacttgtcaattgactgaaacaagtaattcttagccttcaaatccttcagcttcat |
290 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38829685 |
cttcagaattgacttgtcaattaactgaaacaagtaattcttagccttcaaatccttcagcttcat |
38829620 |
T |
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