View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_high_42 (Length: 296)

Name: NF1787_high_42
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_high_42
NF1787_high_42
[»] chr1 (1 HSPs)
chr1 (16-296)||(34367361-34367641)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 34367361 - 34367641
Alignment:
Q  16 cacatacactaggagtggcaaggtgttcttcattcaagaacagattgagccaagtggatccagctttggattcagaatttgccaggacactatcaagaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34367361 cacatacactaggagtggcaaggtgttcttcattcaagaacagattgagccaagtggatccagctttggatacagaatttgccaggacactatcaagaac 34367460  T
Q  116 atgtacttctggtgacaatgcagaacaaccattcgatgcaacaaggaacgattttgacaatgtttacttcaatgctttgttgaggaaaaatggtgttttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34367461 atgtacttctggtgacaatgcagaacaaccattcgatgcaacaaggaacgattttgacaatgtttacttcaacgctttgttgaggaaaaatggtgttttg 34367560  T
Q  216 ttttcagatcaaacactctactctagccctagaacaaggaacattgtgaatgcttatgcaatgaaccaagccatgttcttc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34367561 ttttcagatcaaacactctactctagccctagaacaaggaacattgtgaatgcttatgcaatgaaccaagccatgttcttc 34367641  T

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