View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_high_5 (Length: 660)

Name: NF1787_high_5
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_high_5
NF1787_high_5
[»] chr4 (1 HSPs)
chr4 (18-651)||(51507559-51508192)


Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Complemental strand, 51508192 - 51507559
Alignment:
Q  18 caaatacaacacatcggtgcgttcataagtttcaatattattatccattggcgatcctgctgttttatagttaatcttatgaccatgatcgctgaatatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51508192 caaatacaacacatcggtgcgttcataagtttcaatattattatccattggcgatcctgctgttttatagttaatcttatgaccatgatcgctgaatatg 51508093  T
Q  118 actgacaggtttctctgagtggtcacttatttgatcagtttctgataaatgaggccctagatattattgaagctgcaggaggctccttccacttggttaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51508092 actgacaggtttctctgagtggtcacttatttgatcagtttctgataaatgaggccctagatattattgaagctgcaggaggctccttccacttggttaa 51507993  T
Q  218 ctgtcatgtgggtcagagttttgatgctatatcatactcggaacttgaagtaagcagccatttatttaaaacttgaacttttacttgcggaaaaagatat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51507992 ctgtcatgtgggtcagagttttgatgctatatcatactcggaacttgaagtaagcagccatttatttaaaacttgaacttttacttggggaaaaagatat 51507893  T
Q  318 agtgatattgttattgacagtgtcagagtgtgatttttaatagtcatgcatatagatcttgagttttttgaacaaatagatttttgattttggttgccat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  51507892 agtgatattgttattgacagtgtcagagtgtgatttttaatagtcatgcatatagatcttgagttttttgaacaaataggtttttgattttggtttccat 51507793  T
Q  418 ttgaacaatataattctatcatgttatattatgattaaaaactaattttatattgatgtacccgtacggctccccatacctgaaggaatacatgataata 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51507792 ttgaacaatataattctatcatgttatattatgattaaaaactaattttatattgatgtacccgtacagctccccatacctgaaggaatacatgataata 51507693  T
Q  518 ggaaattctagatacctatgaaagtcacgataagaaaatctaggtgtctcactcataatttcttattggccattctgaatacactgcaatttttgtcatg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51507692 ggaaattctagatacctatgaaagtcacgataagaaaatctaggtgtctcactcataatttcttattggccattctgaatacactgcaatttttgtcatg 51507593  T
Q  618 ttattcgatcgtattcagtgtcttcttctctctc 651  Q
    |||||| |||||||||||||||||||||| ||||    
T  51507592 ttattcaatcgtattcagtgtcttcttctgtctc 51507559  T

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