View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_50 (Length: 271)
Name: NF1787_high_50
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 33363047 - 33363238
Alignment:
| Q |
75 |
agaaaacctaaaataaagtcaaagaaaatttttataaccaaaataagcctaagtggtcaaattgaattagggctacnnnnnnnnn--tctattttgagtg |
172 |
Q |
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| T |
33363047 |
agaaaacctaaaataaagtcaaagaaaaattttataaccaaaataagcctaagtggtcaaattgaattagggctacaaaaaaaaaaatctattttgagtg |
33363146 |
T |
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| Q |
173 |
catttacactattgttggttttgtgcagcactagaacaatgtaggtctaaaaatgcttcttctcattcttttttgaacaagacttcttctca |
264 |
Q |
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| T |
33363147 |
catttacactattgttggttttgtgcagcactagaacaatgtaggtctaaaaatgcttcttctcattcttttttgaacaagacttcttctca |
33363238 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33362922 - 33362998
Alignment:
| Q |
1 |
aatgtatttaatataattggattggatgatagatcagtcagtatattgacagcatacctgcatttctaaagtgtaga |
77 |
Q |
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| T |
33362922 |
aatgtatttaatataattggattggatgatagatcagtcagtatattgacagcatacatgcatttctaaagtgtaga |
33362998 |
T |
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