View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_54 (Length: 250)
Name: NF1787_high_54
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_54 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 2413403 - 2413164
Alignment:
| Q |
11 |
cacagatgaaagaagcaagagctgcaattcgccacgcgacagattatctcctcaaatgtgcaacatcaacacctggaagactctatgttggtgttggaga |
110 |
Q |
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| T |
2413403 |
cacaaatgaaagaagcaagagctgcaattcgccacgcgacagattatctcctcaaatgtgcaacatcaacacctggaagactctatgttggtgttggaga |
2413304 |
T |
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| Q |
111 |
tccaaatgttgatcacaaatgttgggaaagaccagaagatatggacactgttagaactgtttattacgtatcttcaaagaatcctggttctgatgttgcc |
210 |
Q |
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| T |
2413303 |
tccaaatgttgatcacaaatgttgggaaagaccagaagatatggacactgttagaactgtttatttcgtatcttcaaagaatcccggttctgatgttgcc |
2413204 |
T |
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| Q |
211 |
gctgaaaccgctgctgcacttgctgcggcgtctattgttt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2413203 |
gctgaaaccgctgctgcacttgctgcggcgtctattgttt |
2413164 |
T |
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