View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1787_high_6 (Length: 658)

Name: NF1787_high_6
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1787_high_6
NF1787_high_6
[»] chr3 (1 HSPs)
chr3 (60-620)||(1154060-1154620)
[»] chr7 (3 HSPs)
chr7 (268-640)||(29622455-29622827)
chr7 (31-98)||(29622904-29622971)
chr7 (502-573)||(25829752-25829826)
[»] chr5 (15 HSPs)
chr5 (250-614)||(35371076-35371440)
chr5 (258-588)||(35411242-35411572)
chr5 (258-620)||(35386596-35386958)
chr5 (283-588)||(35426021-35426326)
chr5 (258-588)||(35755427-35755757)
chr5 (283-588)||(35377062-35377367)
chr5 (13-107)||(35386341-35386435)
chr5 (272-471)||(35367462-35367661)
chr5 (13-106)||(35411002-35411095)
chr5 (32-105)||(35376760-35376833)
chr5 (32-105)||(35424019-35424092)
chr5 (13-105)||(35755143-35755235)
chr5 (475-620)||(23935870-23936012)
chr5 (13-105)||(35367189-35367281)
chr5 (505-588)||(35367680-35367763)
[»] chr1 (5 HSPs)
chr1 (260-587)||(10414954-10415281)
chr1 (13-186)||(10415370-10415548)
chr1 (272-587)||(10419840-10420155)
chr1 (11-105)||(10409759-10409853)
chr1 (13-105)||(10420343-10420435)
[»] chr2 (9 HSPs)
chr2 (282-628)||(30626650-30626996)
chr2 (415-628)||(30663709-30663922)
chr2 (415-628)||(30672389-30672602)
chr2 (421-485)||(28160440-28160504)
chr2 (282-359)||(30663603-30663680)
chr2 (282-359)||(30672283-30672360)
chr2 (11-98)||(30626398-30626485)
chr2 (11-98)||(30663349-30663436)
chr2 (11-98)||(30672029-30672116)
[»] chr8 (5 HSPs)
chr8 (296-431)||(15294352-15294487)
chr8 (296-431)||(15474721-15474856)
chr8 (28-105)||(15294093-15294170)
chr8 (28-105)||(15474462-15474539)
chr8 (328-450)||(13564902-13565024)


Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 60 - 620
Target Start/End: Original strand, 1154060 - 1154620
Alignment:
60 tacaattaaaggaacaataggatatattcctcctggtaaagttcttaaatccattaatagttactatctttcagaaatttagcattgctaatttattatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
1154060 tacaattaaaggaacaataggatatattcctcctggtaaagttcttaaatccattaatagttactatctttcagaaatttggcattgctaatttattatt 1154159  T
160 atttaaattagttatgaccatcaatgtgatatatatacgtatacacacaatatactccttcattattcctcccctaaatagttgtagtttttgtctgaaa 259  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1154160 atttaaattagttatgaccatcaatgtgatatatatacatatacacacaatatactccttcattattcctcccctaaatagttgtagtttttgtctgaaa 1154259  T
260 aagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1154260 aagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 1154359  T
360 tatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtc 459  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
1154360 tatattttgtgagaatttaagcctatacgagttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtc 1154459  T
460 gaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaa 559  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
1154460 gaagatcagacagaaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagagtttcctgctcatcgaa 1154559  T
560 tgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 620  Q
    || | |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
1154560 tgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctagga 1154620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 268 - 640
Target Start/End: Complemental strand, 29622827 - 29622455
Alignment:
268 ggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatatttt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |  |||  || ||||    
29622827 ggaacaggtgttccagtatcaccacagggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgtttt 29622728  T
368 gtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatca 467  Q
    |||||||||||||||||||| | || ||||| ||||| ||| | |||||||| ||||||||||| ||    ||||| |||||  | ||||  |||||||     
29622727 gtgagaatttaagcctacacaaattctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcg 29622628  T
468 gacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaata 567  Q
    |||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29622627 gacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaata 29622528  T
568 aaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgcgttgctactgtg 640  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29622527 aaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgcgttgctactgtg 29622455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 29622971 - 29622904
Alignment:
31 cattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 98  Q
    ||||||||||| |||||| | | ||| || |||||||| ||||| ||||||||| |||||||||||||    
29622971 cattcaagtaatgatcaaattacttcttccacaattaagggaactataggatatgttcctcctggtaa 29622904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 25829752 - 25829826
Alignment:
502 ttggtgatgtttgctagaattggagttgcatgttctcaaga---gtttcctgctcatcgaatgctaataaaagat 573  Q
    |||||||||||||   ||||||||||| |||||||| ||||   |||||||||||||| ||||||  ||||||||    
25829752 ttggtgatgtttgaaggaattggagttacatgttctgaagaagagtttcctgctcatcaaatgcttgtaaaagat 25829826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 250 - 614
Target Start/End: Original strand, 35371076 - 35371440
Alignment:
250 ttgtctgaaaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagac 349  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
35371076 ttgtttgaaaaagagtacgggacaggtgttccagtatcaccacatggagatatctatagctttgggattcttctgttagagatgctcaccggaaagagac 35371175  T
350 caaccaatagtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttat 449  Q
    ||||  |||  || |||| ||||| | |||| || || || || || |||||||||||| | |||||||||||||||||||| ||   || ||||||| |    
35371176 caacagataacatgttttctgagagtctaagtctgcatgaattctgcaaaatgaaaattccagaaggaatccttgagatagtagattcacatttgctttt 35371275  T
450 gtcgtttgtcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcct 549  Q
      | ||||  |||||| | ||||| |||||||||||||||||||  || ||||||||||||||||||  ||||||||||||||||||| |||||| ||||    
35371276 accatttgctgaagatgatacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattggagttgcatgttctgaagagtctcct 35371375  T
550 gctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatg 614  Q
    |||||||||||| | |||||||||| ||||| ||| ||||||||||||||||||| |||||||||    
35371376 gctcatcgaatgttgataaaagatgctatagctaatttgaatgaaatcaaatcaatgtttccatg 35371440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 258 - 588
Target Start/End: Original strand, 35411242 - 35411572
Alignment:
258 aaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaat 357  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||| | |||||||||||| |||    
35411242 aaaagagtacggagaaggtgttccagtatcaccacggggagatatctacagctttgggattcttctactagagatgttcactgcaaagagaccaacaaat 35411341  T
358 agtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttg 457  Q
    |  |  |||| ||||| | |||| ||||| || || || |||||||||||||| |||||||||||||||||||| ||   || ||||||| |  | ||||    
35411342 aacaacttttctgagagtctaagtctacatgaattctgcaaaatgaaaatttcagaaggaatccttgagatagtagattcacatttgcttttaccatttg 35411441  T
458 tcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcg 557  Q
      |||||| ||||||| |||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||    
35411442 ctgaagatgagacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctagaatcggagttgcatgctctgacgagtttcctgctcatcg 35411541  T
558 aatgctaataaaagatgttatagttaagttg 588  Q
    |||| | |||||||||||||| |||||||||    
35411542 aatgttgataaaagatgttatcgttaagttg 35411572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 258 - 620
Target Start/End: Original strand, 35386596 - 35386958
Alignment:
258 aaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaat 357  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| |||    
35386596 aaaagagtacggagaaggtgttccagtatcaccaaagggagatatctacagctttgggattcttctactagagatgttcaccggaaagagaccaacaaat 35386695  T
358 agtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttg 457  Q
    |  |  |||| |||||  ||||| || ||  | || || ||||| |||||| | |||| ||||||||||||||| ||    |  |||||| |  | ||||    
35386696 aacaacttttctgagagattaagtctgcataaattctgcaaaataaaaattccagaagcaatccttgagatagtagattctcaattgctttttccatttg 35386795  T
458 tcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcg 557  Q
      |||||| |||  || |||||||||||||||||||  || ||||||||||||||||||  ||||||||| ||||||||| ||||| |  || |||||||    
35386796 ctgaagatgagatggggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattggagtcgcatgttctaaagaggtcactactcatcg 35386895  T
558 aatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 620  Q
    |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
35386896 aatgttgataaaagatgttatagttaagttgaatcaaatcaaatcaaagtttccatgctagga 35386958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 283 - 588
Target Start/End: Original strand, 35426021 - 35426326
Alignment:
283 gtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcc 382  Q
    ||||||||||||||||||||||| |||| ||| ||| |||||||||||||||| || ||||||||||||||  |||  || |||| ||||||||||||      
35426021 gtatcaccacagggagatatctatagctatggaattgttctgttagagatgcttactggaaagagaccaacagataacatgttttatgagaatttaagtt 35426120  T
383 tacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtgga 482  Q
    ||||| | || ||||| |||| |||| |||||||||| |||||  |||| ||   | | ||||||||||| ||||  |||||||| |||  | || ||||    
35426121 tacacaaattctgtaagatgagaattcctgaaggaattcttgatgtagtggattcatgcttgcttatgtcatttgctgaagatcaaacacaagttatgga 35426220  T
483 aaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagtt 582  Q
    |||||| || ||  ||||||| ||||||||||||| ||| ||| ||||||||||| |||| |||||| ||||  ||||||| | ||||||||||||||||    
35426221 aaacaacataaaggagtgtttagtgatgtttgctaaaataggaattgcatgttctgaagaatttcctactcagagaatgctcacaaaagatgttatagtt 35426320  T
583 aagttg 588  Q
    ||||||    
35426321 aagttg 35426326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 258 - 588
Target Start/End: Original strand, 35755427 - 35755757
Alignment:
258 aaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaat 357  Q
    ||||||||| ||| |||||| ||| ||||||||  |||||||||| ||||||| ||||||||| ||||| || ||||| |||||||||||||||||  ||    
35755427 aaaagagtatggagcaggtggtccggtatcaccggagggagatatttacagctatgggattctgctgttggaaatgcttaccggaaagagaccaacagat 35755526  T
358 agtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttg 457  Q
    |  || |||| ||||||| |||  |||||| | || ||||| |||| |||| |||||| ||| |||||| | || ||    ||||  |||||  | || |    
35755527 aacatgttttatgagaatctaactctacacaaattctgtaagatgagaattcctgaagaaattcttgaggttgtagattcccgttgccttattccattgg 35755626  T
458 tcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcg 557  Q
    | |||||||||||| || ||||||||||||| || ||  ||||| | ||||||||||||| ||| ||||||||||||||| |||| |||||| ||||  |    
35755627 ttgaagatcagacacgagttgtggaaaacaacataaaggagtgtctagtgatgtttgctaaaataggagttgcatgttctgaagaatttcctactcagag 35755726  T
558 aatgctaataaaagatgttatagttaagttg 588  Q
    |||||| | ||||||||||||| ||||||||    
35755727 aatgctcacaaaagatgttataattaagttg 35755757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 283 - 588
Target Start/End: Original strand, 35377062 - 35377367
Alignment:
283 gtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcc 382  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || ||||||||||||||  |||  || |||||||||||| |||||     
35377062 gtatcaccacagggagatatctatagctatggaattcttctgttagagatgcttactggaaagagaccaacagataacatcttttgtgagaatctaagct 35377161  T
383 tacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtgga 482  Q
    ||||| | |||||||| ||||||||| | |||||||| ||||| ||||| || | | | |||||| |||| ||||| |||||||| |||    |||||||    
35377162 tacacaaattttgtaagatgaaaattccagaaggaattcttgatatagtggatccatgcttgcttgtgtcatttgttgaagatcaaacaaaggttgtgga 35377261  T
483 aaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagtt 582  Q
    ||  |  || ||  ||||| | |||||||||||||  || ||| ||||||||||| |||| || ||| ||||  ||||||| | ||||||| |||||||     
35377262 aagtagcataaaggagtgtctagtgatgtttgctaatataggaattgcatgttctgaagaattccctactcagagaatgctcacaaaagatattatagtg 35377361  T
583 aagttg 588  Q
    ||||||    
35377362 aagttg 35377367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 35386341 - 35386435
Alignment:
13 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttcttaa 107  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
35386341 attcttggaaccacagagcattcaagtaaagatcaagttatttcctctactattaaaggaactataggatatattcctcctggtaaagttcttaa 35386435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 471
Target Start/End: Original strand, 35367462 - 35367661
Alignment:
272 caggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtga 371  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||| || ||||| ||    
35367462 caggtgttccagtatctccacagggagatgtttacagctttgggattctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcga 35367561  T
372 gaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagaca 471  Q
    |||| | ||||| ||| | || ||||| ||||||||| | | || ||| ||||||||||| ||   || |||||||||| | ||| |  |||||||||||    
35367562 gaatcttagccttcacaaattctgtaagatgaaaattcccgtagaaattcttgagatagtggattcacatttgcttatgccatttcttaaagatcagaca 35367661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 35411002 - 35411095
Alignment:
13 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctta 106  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||    
35411002 attcttggaaccacagagcattcaagtaaagatcaagttattttttctacaattaaaggaactataggatatattcctcctggtaaagctctta 35411095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 35376760 - 35376833
Alignment:
32 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    ||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
35376760 attcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt 35376833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 35424019 - 35424092
Alignment:
32 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    ||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
35424019 attcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt 35424092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 35755143 - 35755235
Alignment:
13 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    |||| |||||| || || |||||||||||||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
35755143 attcatggagctacagaacattcaagtaaagatcaagttaattcctctacaattaagggaactataggatatgttcctcctggtaaagttctt 35755235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 475 - 620
Target Start/End: Complemental strand, 23936012 - 23935870
Alignment:
475 attgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatg 574  Q
    |||||||||||||||||||  | || ||||||||||||||||||||||| |||||||| ||   ||| |   | |||||| | ||||   ||||||||||    
23936012 attgtggaaaacaagattaggaggtttttggtgatgtttgctagaattgaagttgcatttt---aagtgccccttgctcaacaaatggccataaaagatg 23935916  T
575 ttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 620  Q
    ||| ||||||||||| |||||| |||||||||||||||||||||||    
23935915 ttacagttaagttgagtgaaataaaatcaaagtttccatgctagga 23935870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 35367189 - 35367281
Alignment:
13 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    ||||||||| |||  || |||||||||||||||||||| | ||| || |||||||| ||||| ||||||||| ||||||||||||||||||||    
35367189 attcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaattaagggaactataggatatgttcctcctggtaaagttctt 35367281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 505 - 588
Target Start/End: Original strand, 35367680 - 35367763
Alignment:
505 gtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttg 588  Q
    ||||||||||||| ||| ||||||||||||||  |||| || ||| ||||||||||| | |||||| |||||| ||| ||||||    
35367680 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgttacagtgaagttg 35367763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 260 - 587
Target Start/End: Complemental strand, 10415281 - 10414954
Alignment:
260 aagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||     
10415281 aagagtacggaacaggtgttccagtatcaccacagggagatatctatagctttgggattcttctgttagagatgctcactggaaagagaccaacaaataa 10415182  T
360 tatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtc 459  Q
     || |||| ||||| |  ||| ||||| || || || |||||||||||| | ||||||||||| |||||||| ||   ||  || ||| || | |||| |    
10415181 catgttttctgagagtcaaagtctacatgaattctgcaaaatgaaaattccagaaggaatcctcgagatagtagattcacaattacttttgccatttgcc 10415082  T
460 gaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaa 559  Q
    |||| | |||| || ||||||||||| |||||||| ||||||||||||||||||| |  ||| ||||||||||||||| ||||  ||||| |||||||||    
10415081 gaagttgagacggggattgtggaaaataagattaagaagtgtttggtgatgtttggtgcaatcggagttgcatgttctgaagaagttccttctcatcgaa 10414982  T
560 tgctaataaaagatgttatagttaagtt 587  Q
    || | |||||||||||||||| ||||||    
10414981 tgttgataaaagatgttatagataagtt 10414954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 10415548 - 10415370
Alignment:
13 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttcttaa----- 107  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||         
10415548 attcttggagccacagagcattcaagtaaagatcaagtcatttcctctactattaaaggaactataggatatattcctactggtaaagctcttaacttat 10415449  T
108 atccattaatagttactatctttcagaaatttagcattgctaatttattattatttaaattagttatgaccatcaatgt 186  Q
    |||||||  | |||| || | || |||||||||||| |||||||||||| ||||||| || || ||||||| |||||||    
10415448 atccatttttggttagtacccttaagaaatttagcaatgctaatttattgttatttatatcagatatgaccctcaatgt 10415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 587
Target Start/End: Complemental strand, 10420155 - 10419840
Alignment:
272 caggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtga 371  Q
    |||||||||||||||| || ||||||||| | |||||||||||||||||  |||||||||||||||| ||||||||||||||  |||  || ||| |  |    
10420155 caggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcactggaaagagaccaacagataacatgtttagcca 10420056  T
372 gaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagaca 471  Q
    |||| | ||||| ||| | || ||||| ||||||||| ||| || ||| ||||||||||| ||   || |||||||||| | |||    |||||||||||    
10420055 gaatcttagccttcacaaattctgtaagatgaaaattcctgtagaaattcttgagatagtggattcacatttgcttatgccatttcctaaagatcagaca 10419956  T
472 ggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaag 571  Q
      |||   |||||| || |||||  ||||| | ||||||||||||  ||| ||||||||||||||  |||| ||  || |||||||| |||| | |||||    
10419955 ctaatgacggaaaaaaacattaaggagtgtctagtgatgtttgctgaaataggagttgcatgttccgaagaattcgctactcatcgagtgctcacaaaag 10419856  T
572 atgttatagttaagtt 587  Q
    |||||||||| |||||    
10419855 atgttatagtgaagtt 10419840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 10409853 - 10409759
Alignment:
11 taattcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    |||||| |||||| || || |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
10409853 taattcgtggagctacagaacattcaagtaaagatcaagttatttcctctacaattaagggaactataggatatgttcctcccggtaaagttctt 10409759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 10420435 - 10420343
Alignment:
13 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    ||||||||| |||  || |||||||||||||||||||| | ||| || ||||| || ||||  ||||||||| ||||||||||||||||||||    
10420435 attcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaatcaagggaagtataggatatgttcctcctggtaaagttctt 10420343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 282 - 628
Target Start/End: Original strand, 30626650 - 30626996
Alignment:
282 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagc 381  Q
    ||||||||| || || |||||||||||||  ||||||||||| ||||| |||||||| ||||| |||||||| ||||| || |||| ||  | | | ||     
30626650 agtatcacctcatggcgatatctacagctacgggattcttctcttagaaatgctcactggaaaaagaccaacaaatagcatgttttctggaagtctcagt 30626749  T
382 ctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtgg 481  Q
    ||||| |  || ||||| |||||| || | || |||||| |||||||||| ||   || ||||||| || | ||||  |||||| ||||||| |||||||    
30626750 ctacatgcattctgtaagatgaaagttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtgg 30626849  T
482 aaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagt 581  Q
    ||||||||||||  || || || ||||||||||||| ||||||||||||||||||  ||||||||||  || |||||||||  ||||||||||||||||     
30626850 aaaacaagattaggaattgcttagtgatgtttgctataattggagttgcatgttcagaagagtttccatctaatcgaatgccgataaaagatgttatagc 30626949  T
582 taagttgaatgaaatcaaatcaaagtttccatgctaggattcgttgc 628  Q
     |||||||||||||||||||||| |||||||||||||||| ||||||    
30626950 aaagttgaatgaaatcaaatcaatgtttccatgctaggatccgttgc 30626996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 415 - 628
Target Start/End: Original strand, 30663709 - 30663922
Alignment:
415 ggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttg 514  Q
    |||||| |||||||||| ||   || ||||||| || | ||||  |||||| ||||||| |||||||||||||||||||  || || || ||||||||||    
30663709 ggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttg 30663808  T
515 ctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatg 614  Q
    ||| ||||||||||||||||||| ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||    
30663809 ctataattggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatg 30663908  T
615 ctaggattcgttgc 628  Q
    | ||||| ||||||    
30663909 cgaggatccgttgc 30663922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 415 - 628
Target Start/End: Original strand, 30672389 - 30672602
Alignment:
415 ggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttg 514  Q
    |||||| |||||||||| ||   || ||||||| || | ||||  |||||| ||||||| |||||||||||||||||||  || || || ||||||||||    
30672389 ggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttg 30672488  T
515 ctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatg 614  Q
    ||| ||||||||||||||||||| ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||    
30672489 ctataattggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatg 30672588  T
615 ctaggattcgttgc 628  Q
    | ||||| ||||||    
30672589 cgaggatccgttgc 30672602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 28160504 - 28160440
Alignment:
421 cttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtggaaaa 485  Q
    ||||||||||| |||||| ||||||||||| ||| || | |||||||||||||||||||||||||    
28160504 cttgagatagtggaccaatgtttgcttatgccgtatggccaagatcagacaggaattgtggaaaa 28160440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 30663603 - 30663680
Alignment:
282 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 359  Q
    ||||||||| || || |||||||||||||  || |||||||| ||||| |||||||| |||||||||||||| |||||    
30663603 agtatcacctcatggtgatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatag 30663680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 30672283 - 30672360
Alignment:
282 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 359  Q
    ||||||||| || || |||||||||||||  || |||||||| ||||| |||||||| |||||||||||||| |||||    
30672283 agtatcacctcatggtgatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatag 30672360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 30626398 - 30626485
Alignment:
11 taattcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 98  Q
    |||||| ||||||||| |   ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
30626398 taattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30626485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 30663349 - 30663436
Alignment:
11 taattcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 98  Q
    |||||| ||||||||| |   ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
30663349 taattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30663436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 30672029 - 30672116
Alignment:
11 taattcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 98  Q
    |||||| ||||||||| |   ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
30672029 taattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30672116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 15294352 - 15294487
Alignment:
296 gagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctacacgatttttg 395  Q
    ||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |||| |||||  | |||||    
15294352 gagatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttg 15294451  T
396 taaaatgaaaatttctgaaggaatccttgagatagt 431  Q
    ||| ||||||||| | |||||||| |||||||||||    
15294452 taagatgaaaattccagaaggaattcttgagatagt 15294487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 15474721 - 15474856
Alignment:
296 gagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctacacgatttttg 395  Q
    ||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |||| |||||  | |||||    
15474721 gagatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttg 15474820  T
396 taaaatgaaaatttctgaaggaatccttgagatagt 431  Q
    ||| ||||||||| | |||||||| |||||||||||    
15474821 taagatgaaaattccagaaggaattcttgagatagt 15474856  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 15294093 - 15294170
Alignment:
28 gagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    |||||||||||||||||| |||| ||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||    
15294093 gagcattcaagtaaagataaagttattgcctctaagattaaaggaactataggatatattcctcctggtaaagttctt 15294170  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 15474462 - 15474539
Alignment:
28 gagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 105  Q
    |||||||||||||||||| |||| ||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||    
15474462 gagcattcaagtaaagataaagttattgcctctaagattaaaggaactataggatatattcctcctggtaaagttctt 15474539  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 450
Target Start/End: Original strand, 13564902 - 13565024
Alignment:
328 gagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgaga 427  Q
    ||||||||||||||||||||||||||  |||  || ||||  ||   | |||  |||||| |||  ||||| ||||||||| | ||||||||||||| ||    
13564902 gagatgctcaccggaaagagaccaacggatatcatgttttccgacggtctaaatctacacaattactgtaagatgaaaattccagaaggaatccttgcga 13565001  T
428 tagtcgaccaacgtttgcttatg 450  Q
    |||| || |||||||||||||||    
13565002 tagtggatcaacgtttgcttatg 13565024  T

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