View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_60 (Length: 237)
Name: NF1787_high_60
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33362791 - 33362587
Alignment:
| Q |
1 |
atatacctctatactaattgttttgtaggtcaaaatatctacaaacgaagcatgtgggctaacttgaagaaaagattatagcctacagcaacaaattact |
100 |
Q |
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| T |
33362791 |
atatacctctatactaattgttttgtaggtcaaaatatctacaaacgaagcatgtgggctaacttgaagaaaagattatagcctacagcaacaaattact |
33362692 |
T |
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| Q |
101 |
caacatatctacaagtttaaatatgtgagccagctaatttgatattcta--nnnnnnnnccaaattatcaaacttatatctgcacattacatacacagtc |
198 |
Q |
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| T |
33362691 |
caacatatctacaag-ttaaatatgtgagccagctaatttgatattctattttttttttccaaattatcaaacttatatctgcacattacatacacagtc |
33362593 |
T |
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| Q |
199 |
acacac |
204 |
Q |
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|||||| |
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| T |
33362592 |
acacac |
33362587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 33362564 - 33362531
Alignment:
| Q |
189 |
atacacagtcacacacatctgcaaccatacaaat |
222 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33362564 |
atacacagtcacacacatctgcaaccatacaaat |
33362531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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