View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_8 (Length: 590)
Name: NF1787_high_8
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 6609059 - 6608488
Alignment:
| Q |
17 |
tggacttgattccaatgggacgggacttgatcctcctcctgactttaatctagaggaagaggaagcgtggtcgtcttggagaggtttcccacccagtgct |
116 |
Q |
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| T |
6609059 |
tggacttgattccaatgggacgggacttgatcctcctcctgactttaatctagaggaagaggaagcgtggtcgtcttggagaggtttcccacccagtgct |
6608960 |
T |
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| Q |
117 |
aggtatagtcattcatccttctgttgtgtaggtgctacgaggtaatctttttagtttctttataattgttatctttgttatgtagctggatctttcattt |
216 |
Q |
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| T |
6608959 |
aggtatagtcattcatccttctgttgtgcaggtgctacgaggtaatctttttagtttctttataattgttatctttgttatgtagctggatctttcattt |
6608860 |
T |
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| Q |
217 |
tgcatgtgatttgtttgtttggtagaaaaagactgatttacagctttttcatttttactgatctcatatatgtccttttcttcatcatgaaccatctatt |
316 |
Q |
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| T |
6608859 |
tgcatgtgatttgtttgtttggtagaaaaagactgatttacagctttttcatttttactgatctcatatatgtccttttcttcatcatgaaccatctatt |
6608760 |
T |
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| Q |
317 |
tgagaatcttcattgaattgattatatttaaaattttaatgatataatttcaatttattgaagattcaatggtattttatttgttttcctctctttacat |
416 |
Q |
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| T |
6608759 |
tgagaatcttcattgaattgattatatttaaaattttaatgatataatttcaatttattgaagattcaatggtattttatttgttttcctctctttacat |
6608660 |
T |
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| Q |
417 |
tgcttatttttgttggcccattgttttaagatattgaattgggtttacagtattgacttgtgatttggtttcttggtagaaaaagacagtgattattaat |
516 |
Q |
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| T |
6608659 |
tgcttatttttgttggcccattgttttaagatattgaattgggtttacagtattgacttgtgatttggtttcttggtagaaaaagacagtgattattaat |
6608560 |
T |
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| Q |
517 |
tagctttttcattttgtttcttgatcaactgcatttagaatttatggaataactgcaaaacattgtggttgg |
588 |
Q |
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| T |
6608559 |
tagctttttcattttgtttcttgatcaactgcatttagaatttatggaataactgcaaaacattgtggttgg |
6608488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 536
Target Start/End: Original strand, 8549265 - 8549346
Alignment:
| Q |
455 |
ttgggtttacagtattgacttgtgatttggtttcttggtagaaaaagacagtgattattaattagctttttcattttgtttc |
536 |
Q |
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|||| |||||| |||| ||||||||||| || |||| |||||||||||| |||||||| | | ||||||||||||||||| |
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| T |
8549265 |
ttggttttacaagattggcttgtgatttgtttgcttgttagaaaaagacaatgattattgctcatctttttcattttgtttc |
8549346 |
T |
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