View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1787_high_9 (Length: 535)
Name: NF1787_high_9
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 202 - 518
Target Start/End: Original strand, 24597959 - 24598275
Alignment:
| Q |
202 |
aagtaagtgtttttataaatgccttgagccttaagacatttcttgacgttgatatgtccctagattcaactcacctaaacttttattttataannnnnnn |
301 |
Q |
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| T |
24597959 |
aagtaagtgtctttataaatgtcttgagccttaaggcatttcttgatgttgatatgtttctggattcaactcacctaaacttttattttataattttttt |
24598058 |
T |
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| Q |
302 |
nngaagaattttattcaattttgatgtttaagaaaagccaacatcaattttgaatccttcacnnnnnnnnnnnnnnnnnnnnnnncggttggacaatttt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
24598059 |
ttgaagaattttattcaattttgatgtttaagaaaagccaaggtcaattttgaatccttcacttttttctttcttttttagttttcggttggacaatttt |
24598158 |
T |
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| Q |
402 |
agacctcaaaaatatgactggttaacgtccacacacacccttnnnnnnntcttcacacccttcttctccttttgtttacttttccttgcaccaatttgcc |
501 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24598159 |
agacctcaaaaatatgtctggttaacgtccacacacacccttaaaaaaatcttcacacccttcttctccttttgtttacttttccttgcaccaatttgcc |
24598258 |
T |
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| Q |
502 |
tcctctttctcttcttc |
518 |
Q |
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||||||||||||||||| |
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| T |
24598259 |
tcctctttctcttcttc |
24598275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 24597781 - 24597957
Alignment:
| Q |
1 |
ttttgatagcatgactaaattgataaactttatacattttagagattctttattatatatttatataatttagggattgaattgaagaattttatgtcaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24597781 |
ttttgatcgcatgactaaattgataaactttatacattttagagattctttattatatatttatataatttagggattgaattgaagaattttatgtcaa |
24597880 |
T |
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| Q |
101 |
cgtaggttagtctagttgataaggactcgactcatattctataatgccgcgagttcaactcttgcagctagcgtcag |
177 |
Q |
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| T |
24597881 |
cttaggttagtctaattgataaggactcaactcatattttataatgctgcgagtttaactcttgcagttagtgtcag |
24597957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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