View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1787_low_10 (Length: 495)
Name: NF1787_low_10
Description: NF1787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1787_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 11809509 - 11809854
Alignment:
| Q |
19 |
tgctagattattttcagggtatttttggtgttgataattcttgtattcacaacgatttggttattagagtaattccttcgttggttattaataatgaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11809509 |
tgctagattattttcagggtatttttggtgttgataattcttgtattcacaacgatttggtgattagagtaattccttcgttggttactaataatgaaaa |
11809608 |
T |
|
| Q |
119 |
ttcaatgctaactgcggctcctgatgttgatgaaattaagcgggcagtgtttgatttgaatggtgatggtgagcctggtcctgacgtatttgggggacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11809609 |
ttcaatgctaactgcggctcctgatgttgatgaaattaagcgggcagtgtttgatttgaatgatgatggtgcgcctggtcctgacgtatttgggggacat |
11809708 |
T |
|
| Q |
219 |
tttttccaacacttttgggatattgttgcttctgatgtgatttcctcggtgcaagaatttttctatatagtttctatattattccaaacctgaactctaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11809709 |
tttttccaacacttttgggatattgttgcttctgatgtgatttcctcggtgcaagaatttttctatatagtttc--tattattccaaacctgaactctaa |
11809806 |
T |
|
| Q |
319 |
tgtaattgttttgatcccgaaagtgcccagtgcatgttccatggatga |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11809807 |
tgtaattgttttgatcccgaaagtgcccagtgcatgttccatggatga |
11809854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 366 - 485
Target Start/End: Original strand, 11811408 - 11811526
Alignment:
| Q |
366 |
actttcgtccgattgctcttgctaattttcaattcaagattgtgacaaaaatcctggcagagaggctagctattatttctatgcggattgtttcccccca |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11811408 |
actttcgtccgattgctcttgctaattttcaattcaagattgtgacaaaaatcctggcagagaggctagctattatttctatgcggattgttt-ccccca |
11811506 |
T |
|
| Q |
466 |
tcaaagaggttttgtctgtg |
485 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11811507 |
tcaaagaggttttgtctgtg |
11811526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 20493391 - 20493856
Alignment:
| Q |
19 |
tgctagattattttcagggtatttttggtgttgataattcttgtattcacaacgatttggttattagagtaattccttcgttggttattaataatgaaaa |
118 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| ||| | | || ||||| || | | |||||||||||| |||||| || ||||||| |
|
|
| T |
20493391 |
tgcttgattatttccagggtatttttggtgttgataatttttgcacttcgaatgatttagtaagcaaagtaattccttctctggttacggatcatgaaaa |
20493490 |
T |
|
| Q |
119 |
ttcaatgctaactgcggctcctgatgttgatgaaattaagcgggcagtgtttgatttgaatggtgatggtgagcctggtcctgacgtatttgggggacat |
218 |
Q |
| |
|
|| ||| | ||||||||||||||| |||||||||||||| ||| || ||||| ||||||||||||| || || |||||| |||| ||||| || ||| |
|
|
| T |
20493491 |
tttgatgttgactgcggctcctgatattgatgaaattaagaaggctgtttttgacttgaatggtgatgatgtgcgtggtcccgacgactttggtggtcat |
20493590 |
T |
|
| Q |
219 |
tttttccaacacttttgggatattgttgcttctgatgtgatttcctcggtgcaagaatttttct-atatagtttctatattattccaaacctgaactcta |
317 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||||||| |||| ||||| ||||| ||||| | || ||| | ||| || ||| || || ||||||| |
|
|
| T |
20493591 |
tttttccaagatttttggaatattgtggcttctgatgtggtttcttcggttcaagatttttttttatttaggtgttat--tactcctaatcttaactcta |
20493688 |
T |
|
| Q |
318 |
atgtaattgttttgatcccgaaagtgcccagtgcatgttccatggatgactttcgtccgattgctcttgctaattttcaattcaagattgtgacaaaaat |
417 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||||| ||| ||| | || || ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
20493689 |
atgtaattgttttgattccgaaagtgcatggtgcttgttccatgggtgattttaggcctatagctctagctaatttccaattcaagattgtgacaaaaat |
20493788 |
T |
|
| Q |
418 |
cctggcagagaggctagctattat-ttctatgcggattgtttccccccatcaaagaggttttgtctgtg |
485 |
Q |
| |
|
||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||||||| |||| |
|
|
| T |
20493789 |
attggcagagaggctggctaatatcttct-tgcgtattgttttcccccatcaacgaggttttgtttgtg |
20493856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 26787109 - 26787011
Alignment:
| Q |
146 |
tgatgaaattaagcgggcagtgtttgatttgaatggtgatggtgagcctggtcctgacgtatttgggggacattttttccaacacttttgggatattgt |
244 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||| |||||| || ||||| || || |||||||||| ||||| |
|
|
| T |
26787109 |
tgatgaaattaagcgggctgtctttgatttgaatggtgatggtgcgcctggtccggacggatttggaggtcatttctttcagtacttttgggacattgt |
26787011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University